Gene detail

Detail information of GWHGAAZE019047

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010106871.1	1.89307E-70	Mitogen-activated protein kinase kinase kinase A [Morus notabilis]
Swissprot	tr\|Q9CAD5\|YODA_ARATH	5E-31	Mitogen-activated protein kinase kinase kinase YODA
trEMBL	tr\|W9SJR9\|W9SJR9_9ROSA	7E-71	Mitogen-activated protein kinase kinase kinase A {ECO:0000313\|EMBL:EXC12415.1}
TAIR10	AT4G36950.1	4E-51	mitogen-activated protein kinase kinase kinase 21

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	30748916	30750784	+
GWHAAZE00000005	mRNA	30748916	30750784	+
GWHAAZE00000005	exon	30748916	30749109	+
GWHAAZE00000005	exon	30750211	30750784	+
GWHAAZE00000005	CDS	30748916	30749109	+
GWHAAZE00000005	CDS	30750211	30750784	+

Transcript Sequence
>GWHTAAZE019069 ATGCGCTGCCTCTCTCTCAAACTCGAAGGTCACATTCTTTCCGAACTTCATGGCTGCCCTGAGATTATTACTTGCTTTGGTGATGATTTCAGCGTTGAGAACGGAACTGAATTCTACAATCTGCTCCTAGAGTTTGCTCCAAAAGGTACCCTCACCAACTTTATTGAAGCCCGAGGTGGAAGATTACCAGAGTTATCACTAAAGGGGCTTTCTCATATTCATGAGGAGGGCTATGTCCACTGCGATATCAAGCCCTGTAACATTCTCGTCTTTCCATCTCCAAGAAGCAGCGTAAACTACTTGAAGATTGCTGATTTTGGATTAGCAAAGAAACGTGGAGACTATAAACCAAAGGTGGTTACTGATTCTTGTTTTAGAGGGACTCCACTTTATAGTTCGCCAGAGTCAGTGCTTGGGAAATACGAGGCGCCCATGGATATATGGGCTCTGGGGTGCACTATAATCAAGATGGTGACAGGGAAGCCCATCTGGAGTGCTACAAATATAGAAGATCTGAAGCATCAAATTACTTCAGTGGAAGTGCCGGACATGCCAGCGCAGATGTCGGAACAGGGCAAAGATTTTCTACGGAGGTGTTTGGAAAGGAATCCGGCCAAAAGGTGGACGGCTGAGATGCTTTTGAGCCATCCGTTCATTACTATGGGTGACTTTGCCACCATTGATGAGGGTAGAAATTTATTGGTTTATGAAAGTCCCCTTGGATTTGGATGGGTTTCGAGTCTGTCCTTGTTTTCGGTTAATTGCTGA

Network for GWHGAAZE019047

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	9	219	8.40E-38

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE11

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.015
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.230
	SRR8316896	Juvenile bud stage	0.090
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.228
	SRR8316901	Third green stage	0.577
	SRR8316898	Complete white stage	0.160
	SRR8316899	Complete white stage	1.472
	SRR8316903	Complete white stage	0.266
	SRR8316902	Silver flowering stage	0.109
	SRR8316904	Silver flowering stage	0.113
	SRR8316905	Silver flowering stage	0.054
	SRR8316906	Gold flowering stage	0.204
	SRR8316907	Gold flowering stage	0.112
	SRR8316908	Gold flowering stage	0.084
SRP132670	SRR6706286	Control	0.496
	SRR6706287	Light intensity 50%	0.576
	SRR6706288	Light intensity 20%	0.932
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.249
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.339
	CNS0095596	Whole white alabastrum(diploid) 3	0.348
	CNS0095597	Whole white alabastrum(diploid) 4	0.287
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.063
	CNS0095601	Golden flower (diploid) 1	0.269
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.926
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.375
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.534
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.464
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.431
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.334
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.106
	CNS0095612	Silvery flower (diploied) 3	0.104
	CNS0095613	Golden flower (tetraploid) 1	0.100
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.107
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.432
	CRR073302	Leaf 3	0.270
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.002
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.127
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.379
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.414
	CRR073319	Tawny withering 2	0.120
	CRR073320	Tawny withering 3	0.973