Gene detail

Detail information of GWHGAAZE019048

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002267176.1	2.05303E-78	PREDICTED: mitogen-activated protein kinase kinase kinase 2 [Vitis vinifera]
Swissprot	tr\|Q9CAD5\|YODA_ARATH	3E-37	Mitogen-activated protein kinase kinase kinase YODA
trEMBL	tr\|D7SZS0\|D7SZS0_VITVI	8E-79	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI23749.3}
TAIR10	AT4G36950.1	4E-55	mitogen-activated protein kinase kinase kinase 21

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	30758149	30759102	+
GWHAAZE00000005	mRNA	30758149	30759102	+
GWHAAZE00000005	exon	30758149	30759102	+
GWHAAZE00000005	CDS	30758149	30759102	+

Transcript Sequence
>GWHTAAZE019070 ATGGCCAACGCTAAGAAATTGGTCAAGTGCAGATTGTTAGTGAGGGGCTCTTACGGCACGGTTTATTTGGCCGCACCACAGCCATCTCATACTAATCACTCCAACACATCCACTGCTTCTCAGTTCGTAGCTGTGAAATCGGTGCCCTATCTCGAGAACGACATGCGCTGCCTCTCTCTCAAACTCGAAGGTCACATTCTTTCCGAACTTCAAGGCTGCCCTGAGATTATTACATGCTTTGGTGATGATTTCAGCATTGAGAACGGAACTGAATTCTACAATCTGCTACTTGAGTTTGCCCCAAAAGGTACCCTTACCAACCTTATTGAAGCCCGAGGTGGCAGATTACCAGAGTTGGAGGTCCAATGGTATGCATATAAGCTCCTAAAGGGGCTTTCTCATATTCATGAGGAGGGCTATGTCCACTGCGATATCAAGCCCTGTAACATTCTCGTCTTTCCATCTCCAAGAAGCAGCATAAACTACTTGAAGATTGCTGATTTTGGATTAGCAAAGAAACGTGGAGACGATAAACCAAAGGTGGTTACCGGTTCTTGTTTTAGAGGGACTCCACTTTATAGTTCGCCAGAGTCTGTGCTTGGGAAATACAAGGCACCCATGGATATATGGGCTCTGGGGTGCACTATAATCGAGATGGTGACAGGGAAGCCCATCTGGAGTGCTACAAATATAGAAGATCTGAAGCATCAAATTACTTCAGTGGAAGTGCCGGACATGCCAGCGCAGATGTCGGAACAGGGGAAAGATTTTCTACGGAGGTGTTTGGAAAGGAATCCGGCCAAAAGGTGGACGGCTGAGATGCTTTTGAGCCATCCGTTCATTACTATGGGTGACTTTGCCACCATTGATGAGGGTAGAAATTTATTGGTTTATGAAAGTCCCCTTGGATTTGGATGGGTTTCGAGTCTGTCCTTGTTTTCGGTTAATTGCTGA

Network for GWHGAAZE019048

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	15	281	1.50E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE11

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.192
	SRR3591706	second leaf	0.069
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.225
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.012
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.177
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.065
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.023
	SRR8316898	Complete white stage	0.045
	SRR8316899	Complete white stage	0.107
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.029
	SRR8316904	Silver flowering stage	0.011
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.057
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.030
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.020
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.085
	CNS0095596	Whole white alabastrum(diploid) 3	0.036
	CNS0095597	Whole white alabastrum(diploid) 4	0.015
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.015
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.020
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.021
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.079
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.030
	CNS0095613	Golden flower (tetraploid) 1	0.038
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.025
	CRR073298	Stem 2	0.014
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.018
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.123
	CRR073319	Tawny withering 2	0.032
	CRR073320	Tawny withering 3	0.022