Gene detail

Detail information of GWHGAAZE019062

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010106871.1	2.1331E-79	Mitogen-activated protein kinase kinase kinase A [Morus notabilis]
Swissprot	tr\|Q9CAD5\|YODA_ARATH	2E-38	Mitogen-activated protein kinase kinase kinase YODA
trEMBL	tr\|W9SJR9\|W9SJR9_9ROSA	8E-80	Mitogen-activated protein kinase kinase kinase A {ECO:0000313\|EMBL:EXC12415.1}
TAIR10	AT4G36950.1	7E-60	mitogen-activated protein kinase kinase kinase 21

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	30937881	30938837	-
GWHAAZE00000005	mRNA	30937881	30938837	-
GWHAAZE00000005	exon	30937881	30938837	-
GWHAAZE00000005	CDS	30937881	30938837	-

Transcript Sequence
>GWHTAAZE019084 ATGGCCAACGACAAGAAATTGGTCAAGTGCAGATTGTTGGGGAAGGGCTCTTACGGCACCGTCTATATGGCCGCACCACAACCATCTCATACTAATTACTCCACTACATCCACTGCTTCTCAGGCGGTAGCTGTGAAATCGGTGCCCTATCGCGAGAACGACATGTGCTGCCTCTCTCTCAAACTCGAAGGTCACATTCTTTCCGAACTTCAAGGCTGCCCTGAGATTATTACATGCTTTGGTGATGATTTCAGCGTTGAGAACGGAACTGAATTCTACAATCTGCTCCTTGAGTTCACCCACAAAGGTACCCTCACCAACCTTATTGAAACCCGAGGCGGCAGATTACCAGAGTGGGAGGTCCGCTGGTACGCATATAAGCTCCTAAAGGGGCTTTTTCATATTCATGAGGAGGGCTACGTTCACTGTGATATCAAGCCCAGTAACATTCTTGTCTTTCCATCTCCAAGAAGCGGCGTAAACTACTTGAAGATTGCTGATTTTGGATTAGCAAAGAAACGTGGAGATGATAAACCAAAGGTGGTTACTGATTCTTGTTTTCGAGGGACTCCGCTTTATAGTTCGCCAGAGTCTGTGCTTGGGAAATACGAGGCGCCCATGGATATTTGGGCTTTGGGGTGCACTATAATCGAGATGGTGACAGGGAAGCCTATGTGGAGTACTGGTGTAAATATAGAAGATCTCAAGCAACAAATTACTTCGGTGGAAGTGCCGGACATGCCAGCGCAGATGTCAGAACAGGGGAAAGATTTTCTACGGAGGTGTTTGGAAAGGAATCCGACCAAAAGGTGGACGGCCGAGATGCTTTTAAGCCATCCGTTCATTACTATCGGAGACTTCACCACCATTGATGAGGGCAGAAATTTGTTGGTTTATGAAAGTCCCCTTGGGTTTGGATGGGTTTCGAGTCTCTCCTTGTTTTCGGTTAATTGCTGA

Network for GWHGAAZE019062

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0040	GO:0008097 5S rRNA binding GOslim:molecular_function map03040 Spliceosome GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity GOslim:molecular_function

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	9	282	1.10E-50

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE11

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.368
	SRR3591706	second leaf	0.073
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.674
	SRR3591709	Stem	0.256
	SRR3591710	White floral bud	0.208
	SRR3591711	White flower	0.117
	SRR3591712	Green floral bud	0.472
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.611
	SRR8316896	Juvenile bud stage	2.974
	SRR8316897	Juvenile bud stage	2.186
	SRR8316894	Third green stage	1.010
	SRR8316900	Third green stage	2.529
	SRR8316901	Third green stage	2.926
	SRR8316898	Complete white stage	0.045
	SRR8316899	Complete white stage	0.756
	SRR8316903	Complete white stage	0.404
	SRR8316902	Silver flowering stage	0.048
	SRR8316904	Silver flowering stage	0.063
	SRR8316905	Silver flowering stage	0.072
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.155
	SRR8316908	Gold flowering stage	0.046
SRP132670	SRR6706286	Control	1.450
	SRR6706287	Light intensity 50%	1.284
	SRR6706288	Light intensity 20%	1.463
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.949
	CNS0095593	Slightly white alabastrum(diploid) 2	1.991
	CNS0095594	Slightly white alabastrum(diploid) 3	1.440
	CNS0095595	Whole white alabastrum(diploid) 2	1.928
	CNS0095596	Whole white alabastrum(diploid) 3	1.402
	CNS0095597	Whole white alabastrum(diploid) 4	1.262
	CNS0095598	Silvery flower (diploied) 1	0.663
	CNS0095599	Silvery flower (diploied) 2	0.348
	CNS0095600	Silvery flower (diploied) 3	0.217
	CNS0095601	Golden flower (diploid) 1	0.667
	CNS0095602	Golden flower (diploid) 2	0.541
	CNS0095603	Golden flower (diploid) 3	0.173
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.124
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.114
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.929
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.001
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.452
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.469
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.676
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.069
	CNS0095614	Golden flower (tetraploid) 2	0.059
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	4.656
	CRR073298	Stem 2	5.234
	CRR073299	Stem 3	0.347
	CRR073300	Leaf 1	3.826
	CRR073301	Leaf 2	5.062
	CRR073302	Leaf 3	0.379
	CRR073303	Juvenile bud 1	0.492
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.519
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.179
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.187
	CRR073319	Tawny withering 2	0.857
	CRR073320	Tawny withering 3	0.510