Detail information of GWHGAAZE019078


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002278667.20PREDICTED: probable glutamate--tRNA ligase, cytoplasmic isoform X1 [Vitis vinifera]
Swissprottr|P52780|SYQ_LUPLU3E-65Glutamine--tRNA ligase
trEMBLtr|F6I4J3|F6I4J3_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB61977.1}
TAIR10AT5G26710.10Glutamyl/glutaminyl-tRNA synthetase, class Ic

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3136759231371820+
GWHAAZE00000005mRNA3136759231371820+
GWHAAZE00000005exon3136759231367729+
GWHAAZE00000005exon3136786031368013+
GWHAAZE00000005exon3136849831369627+
GWHAAZE00000005exon3137052631370993+
GWHAAZE00000005exon3137160231371820+
GWHAAZE00000005CDS3136759231367729+
GWHAAZE00000005CDS3136786031368013+
GWHAAZE00000005CDS3136849831369627+
GWHAAZE00000005CDS3137052631370993+
GWHAAZE00000005CDS3137160231371820+
Transcript Sequence

Network for GWHGAAZE019078

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0288Protein Kinases CMGC_GSK family Protein Kinases CMGC_GSK
GO:0004818 glutamate-tRNA ligase activity GOslim:molecular_function
GO:0006424 glutamyl-tRNA aminoacylation GOslim:biological_process
GO:0043039 tRNA aminoacylation GOslim:biological_process
GO:0005737 cytoplasm GOslim:cellular_component
GO:0006418 tRNA aminoacylation for protein translation GOslim:biological_process
GO:0009058 biosynthetic process GOslim:biological_process
GO:0030170 pyridoxal phosphate binding GOslim:molecular_function
GO:0004812 aminoacyl-tRNA ligase activity GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00043.26GST_C691240.00024
PF00749.22tRNA-synt_1c1934972.20E-101
PF03950.19tRNA-synt_1c_C5006776.10E-35
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01885EARS, gltX Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Porphyrin and chlorophyll metabolismmap00860
Aminoacyl-tRNA biosynthesismap00970

Gene Ontology

GO term OntologyName
GO:0006424biological_processglutamyl-tRNA aminoacylation
GO:0043039biological_processtRNA aminoacylation
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0006412biological_processtranslation
GO:0005737cellular_componentcytoplasm
GO:0000166molecular_functionnucleotide binding
GO:0004818molecular_functionglutamate-tRNA ligase activity
GO:0005524molecular_functionATP binding
GO:0004812molecular_functionaminoacyl-tRNA ligase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf49.186
SRR3591706second leaf20.645
SRR3591707mature leaf22.363
SRR3591708Shoot apex44.527
SRR3591709Stem58.760
SRR3591710White floral bud39.946
SRR3591711White flower56.052
SRR3591712Green floral bud45.496
SRR3591713Yellow flower46.059
SRP173429 SRR8316895Juvenile bud stage 34.313
SRR8316896Juvenile bud stage 51.467
SRR8316897Juvenile bud stage 19.620
SRR8316894Third green stage 19.009
SRR8316900Third green stage 56.390
SRR8316901Third green stage 51.959
SRR8316898Complete white stage 26.700
SRR8316899Complete white stage 85.808
SRR8316903Complete white stage 38.060
SRR8316902Silver flowering stage27.169
SRR8316904Silver flowering stage39.032
SRR8316905Silver flowering stage18.898
SRR8316906Gold flowering stage 64.791
SRR8316907Gold flowering stage 62.589
SRR8316908Gold flowering stage 70.892
SRP132670SRR6706286Control64.102
SRR6706287Light intensity 50%65.575
SRR6706288Light intensity 20%70.807
CNP0000432CNS0095592Slightly white alabastrum(diploid) 141.090
CNS0095593Slightly white alabastrum(diploid) 243.888
CNS0095594Slightly white alabastrum(diploid) 340.123
CNS0095595Whole white alabastrum(diploid) 237.631
CNS0095596Whole white alabastrum(diploid) 339.072
CNS0095597Whole white alabastrum(diploid) 434.786
CNS0095598Silvery flower (diploied) 150.934
CNS0095599Silvery flower (diploied) 242.412
CNS0095600Silvery flower (diploied) 372.994
CNS0095601Golden flower (diploid) 138.474
CNS0095602Golden flower (diploid) 268.788
CNS0095603Golden flower (diploid) 367.872
CNS0095604Slightly white alabastrum(tetraploid) 142.535
CNS0095605Slightly white alabastrum(tetraploid) 235.239
CNS0095606Slightly white alabastrum(tetraploid) 366.100
CNS0095607Whole white alabastrum(tetraploid) 126.338
CNS0095608Whole white alabastrum(tetraploid) 221.299
CNS0095609Whole white alabastrum(tetraploid) 352.897
CNS0095610Silvery flower (diploied) 156.674
CNS0095611Silvery flower (diploied) 256.467
CNS0095612Silvery flower (diploied) 343.652
CNS0095613Golden flower (tetraploid) 132.172
CNS0095614Golden flower (tetraploid) 249.642
CNS0095615Golden flower (tetraploid) 350.096
CRA001975CRR073297Stem 157.023
CRR073298Stem 257.959
CRR073299Stem 359.904
CRR073300Leaf 163.881
CRR073301Leaf 257.866
CRR073302Leaf 362.507
CRR073303Juvenile bud 167.012
CRR073304Juvenile bud 258.325
CRR073305Juvenile bud 374.405
CRR073306Third green 123.961
CRR073307Third green 224.970
CRR073308Third green 323.951
CRR073309Second white 129.285
CRR073310Second white 228.859
CRR073311Second white 328.038
CRR073312Silver flowering 128.001
CRR073313Silver flowering 227.716
CRR073314Silver flowering 325.262
CRR073315Gold flowering 124.201
CRR073316Gold flowering 234.525
CRR073317Gold flowering 326.811
CRR073318Tawny withering 162.777
CRR073319Tawny withering 256.887
CRR073320Tawny withering 363.754