Gene detail

Detail information of GWHGAAZE019114

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008223483.1	PREDICTED: S-adenosylmethionine synthase 5 [Prunus mume]
Swissprot	tr\|Q56TU3\|METK2_DAUCA	S-adenosylmethionine synthase 2
trEMBL	tr\|M1QDP5\|M1QDP5_PRUPE	S-adenosylmethionine synthase {ECO:0000256\|RuleBase:RU000541}
TAIR10	AT1G02500.2	S-adenosylmethionine synthetase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	32093658	32094839	-
GWHAAZE00000005	mRNA	32093658	32094839	-
GWHAAZE00000005	exon	32093658	32094839	-
GWHAAZE00000005	CDS	32093658	32094839	-

Transcript Sequence
>GWHTAAZE019136 ATGGACACCTTTTTGTTCACCTCCGAATCCGTGAACGAGGGTCACCCCGACAAGCTTTGCGATCAGATCTCCGATGCAGTCCTTGATGCCTGCCTCGAACAGGATCCCGACAGCAAGGTTGCCTGCGAGACTTGCACCAAGACCAACATGGTCATGGTTTTCGGAGAGATCACAACCAAGGGCAAGATCGACTACGAGAAGATTGTAAGGGATACTTGCCGAACCATTGGGTTCGTGTCCGATGATGTTGGGCTTGATGCCGACAATTGCAAGGTCCTAGTCCAGATCGAGCAACAGAGTCCCGATATTGCCCAAGGTGTCCACGGTCATCTCACCAAGCGCCCTGAGGAGATAGGTGCCGGTGACCAGGGTCACATGTTTGGTTATGCCACCGACGAGACCCCCGAGCTTATGCCCCTTAGCCACGTTCTCGCTACCCAGCTCGGCGCCAAGCTCACTGAGGTCCGCAAAAACGGAACCTGTGCGTGGTTGAGACCAGATGGCAAAACCCAAGTCACCGTTGAGTACTACAACGACAATGGCGCAATGGTCCCCATCCGTGTCCACACCATCCTTATTTCCACCCAACACGACGAAACCGTCACCAACGACGAGATTGCTGCCGACCTAAAGGAGCACGTCATTAAGCCAATCGTACCCGCCAAGTACCTTGATGAGAAGACCATCTTCCACCTTAACCCTTCGGGCCGTTTCGTCATTGGTGGACCCCATGGTGACGCCGGTCTCACCGGCCGTAAGATCATCATCGACACCTACGGTGGGTGGGGTGCTCACGGTGGTGGTGCCTTCTCTGGCAAGGACCCAACCAAGGTCGACCGAAGTGGTGCCTACATCGTAAGGCAGGCAGCTAAGAGCATTGTTGCAAGCGGGCTCGCTCGTCGGTGCATCGTGCAAGTCTCTTATGCCATTGGTGTGCCCGAGCCGTTGTCAGTTTTCGTCGACTCGTATGGTACCGGAAAGATCCCTGACAAGGAGATTTTGAAGATTGTGAAGGAGAGCTTCGATTTCAGGCCCGGAATGATTGCTATTAACCTAGATCTTAAGAGGGGTGGCAATAGAAGGTTCTTGAAGACTGCCGCTTACGGACATTTTGGCCGAGACGATGCCGACTTCACATGGGAAGTAGTGAAGCCCCTCAAATGGGAGAAGCCGCAAGCCTAA

Network for GWHGAAZE019114

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00438.21	S-AdoMet_synt_N	4	101	5.10E-42
PF02772.17	S-AdoMet_synt_M	117	238	1.90E-46
PF02773.17	S-AdoMet_synt_C	240	381	1.50E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00789	metK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0006556	biological_process	S-adenosylmethionine biosynthetic process
GO:0004478	molecular_function	methionine adenosyltransferase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1603.191
	SRR3591706	second leaf	1500.463
	SRR3591707	mature leaf	1346.960
	SRR3591708	Shoot apex	1041.604
	SRR3591709	Stem	6889.300
	SRR3591710	White floral bud	703.357
	SRR3591711	White flower	833.575
	SRR3591712	Green floral bud	1043.669
	SRR3591713	Yellow flower	464.774
SRP173429	SRR8316895	Juvenile bud stage	1016.470
	SRR8316896	Juvenile bud stage	1224.313
	SRR8316897	Juvenile bud stage	347.493
	SRR8316894	Third green stage	322.424
	SRR8316900	Third green stage	823.198
	SRR8316901	Third green stage	947.621
	SRR8316898	Complete white stage	345.445
	SRR8316899	Complete white stage	1002.964
	SRR8316903	Complete white stage	427.240
	SRR8316902	Silver flowering stage	430.903
	SRR8316904	Silver flowering stage	445.349
	SRR8316905	Silver flowering stage	252.727
	SRR8316906	Gold flowering stage	852.596
	SRR8316907	Gold flowering stage	766.035
	SRR8316908	Gold flowering stage	804.840
SRP132670	SRR6706286	Control	1140.901
	SRR6706287	Light intensity 50%	1145.725
	SRR6706288	Light intensity 20%	1204.439
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	945.503
	CNS0095593	Slightly white alabastrum(diploid) 2	901.461
	CNS0095594	Slightly white alabastrum(diploid) 3	915.015
	CNS0095595	Whole white alabastrum(diploid) 2	663.541
	CNS0095596	Whole white alabastrum(diploid) 3	696.187
	CNS0095597	Whole white alabastrum(diploid) 4	623.953
	CNS0095598	Silvery flower (diploied) 1	922.915
	CNS0095599	Silvery flower (diploied) 2	824.201
	CNS0095600	Silvery flower (diploied) 3	784.724
	CNS0095601	Golden flower (diploid) 1	929.155
	CNS0095602	Golden flower (diploid) 2	923.681
	CNS0095603	Golden flower (diploid) 3	883.689
	CNS0095604	Slightly white alabastrum(tetraploid) 1	761.542
	CNS0095605	Slightly white alabastrum(tetraploid) 2	679.944
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1367.905
	CNS0095607	Whole white alabastrum(tetraploid) 1	563.103
	CNS0095608	Whole white alabastrum(tetraploid) 2	361.315
	CNS0095609	Whole white alabastrum(tetraploid) 3	761.916
	CNS0095610	Silvery flower (diploied) 1	541.146
	CNS0095611	Silvery flower (diploied) 2	653.572
	CNS0095612	Silvery flower (diploied) 3	338.035
	CNS0095613	Golden flower (tetraploid) 1	574.958
	CNS0095614	Golden flower (tetraploid) 2	568.657
	CNS0095615	Golden flower (tetraploid) 3	394.217
CRA001975	CRR073297	Stem 1	2448.709
	CRR073298	Stem 2	2564.042
	CRR073299	Stem 3	3796.060
	CRR073300	Leaf 1	1997.697
	CRR073301	Leaf 2	2136.396
	CRR073302	Leaf 3	2828.916
	CRR073303	Juvenile bud 1	2183.532
	CRR073304	Juvenile bud 2	2664.868
	CRR073305	Juvenile bud 3	2320.973
	CRR073306	Third green 1	2749.114
	CRR073307	Third green 2	1812.789
	CRR073308	Third green 3	1954.850
	CRR073309	Second white 1	1998.738
	CRR073310	Second white 2	1203.769
	CRR073311	Second white 3	1237.881
	CRR073312	Silver flowering 1	2170.366
	CRR073313	Silver flowering 2	2758.204
	CRR073314	Silver flowering 3	2039.149
	CRR073315	Gold flowering 1	702.079
	CRR073316	Gold flowering 2	885.639
	CRR073317	Gold flowering 3	1001.079
	CRR073318	Tawny withering 1	2517.409
	CRR073319	Tawny withering 2	2351.918
	CRR073320	Tawny withering 3	3156.167