Gene detail

Detail information of GWHGAAZE019461

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011092265.1	0	PREDICTED: superkiller viralicidic activity 2-like 2 isoform X2 [Sesamum indicum]
Swissprot	tr\|B9DFG3\|ISE2_ARATH	4E-71	DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic (Precursor)
trEMBL	tr\|F6H9Z0\|F6H9Z0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49140.1}
TAIR10	AT1G59760.1	0	RNA helicase, ATP-dependent, SK12/DOB1 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	44165810	44178807	+
GWHAAZE00000005	mRNA	44165810	44178807	+
GWHAAZE00000005	exon	44165810	44166163	+
GWHAAZE00000005	exon	44166310	44166587	+
GWHAAZE00000005	exon	44167407	44167607	+
GWHAAZE00000005	exon	44167682	44167900	+
GWHAAZE00000005	exon	44170972	44171310	+
GWHAAZE00000005	exon	44172548	44172658	+
GWHAAZE00000005	exon	44173207	44173457	+
GWHAAZE00000005	exon	44174114	44174237	+
GWHAAZE00000005	exon	44174308	44174599	+
GWHAAZE00000005	exon	44175964	44176118	+
GWHAAZE00000005	exon	44176742	44176891	+
GWHAAZE00000005	exon	44176976	44177208	+
GWHAAZE00000005	exon	44177542	44177806	+
GWHAAZE00000005	exon	44178529	44178807	+
GWHAAZE00000005	five_prime_UTR	44165810	44166163	+
GWHAAZE00000005	five_prime_UTR	44166310	44166314	+
GWHAAZE00000005	CDS	44166315	44166587	+
GWHAAZE00000005	CDS	44167407	44167607	+
GWHAAZE00000005	CDS	44167682	44167900	+
GWHAAZE00000005	CDS	44170972	44171310	+
GWHAAZE00000005	CDS	44172548	44172658	+
GWHAAZE00000005	CDS	44173207	44173457	+
GWHAAZE00000005	CDS	44174114	44174237	+
GWHAAZE00000005	CDS	44174308	44174599	+
GWHAAZE00000005	CDS	44175964	44176118	+
GWHAAZE00000005	CDS	44176742	44176891	+
GWHAAZE00000005	CDS	44176976	44177208	+
GWHAAZE00000005	CDS	44177542	44177806	+
GWHAAZE00000005	CDS	44178529	44178807	+

Transcript Sequence
>GWHTAAZE019483 TCCCTCCTCTCTCAAACTCAGAAACGATCCCTAATACTAATAAGCTTGAACCCTAATCTGCTCAAACCCACCCAGTGCAGAGCAGGCCGCCTCTCTCTCGAGCTAGGGTTTCACTTCTGACGGTGAAGAGTACTAGATTTGAGAGTAGTGGTGCGTAAGGTTGTTGCTTTTGTTTTTGAAACCGGAAGTTGGTCTCATTGGTTCTTGAAATATGTTAGGTAGTTTGTATCTCTAGTGTTTATCGGTTTAAATTGACTCAGTTTCTTGCGTAAAAAAAAAATAAAATAATCTGCTCAAACCCACCCAGTGCAGAGCAAGCCGCCTCTCTCTCGAGCTAGGGTTTCACTTCTGAAGAATTAATGGGGTCAATTAAGAGGAAATCAGTAGAAGACCCAGCTGAGGATTCTTCCACTCCTCCGCTTAAACAACACAAGGATGATAATGGTTTAATGGTTGTTGATGAACAAGTAGCTTGTGTACGCGATGTATCGTATCCGGAGGGATACGTTCCTCGCTCTTGGAATTCGTCTGCGGTTCAAGAAAACTCTAAACCAGCAAAGGAATTTGCTTTTACTCTCGACCCGTTTCAATTGGAGGCTATCAAGTGCCTTGATGCTGGTGAATCTGTCATGGTATCAGCTCATACATCAGCAGGGAAAACTGTTGTAGCATCATATGCAATTGCCATGTCACTTGCAAATAAGCAACGTGTAATATACACTTCACCTATAAAGGCACTCAGCAACCAAAAATACAGAGAGTTTAAAGCGGAGTTCGAGGATGTCGGTTTGATGACCGGAGATGTCACAATTGAGCCCAATGCTTCTCTTTTGGTGATGACTACAGAAATTTGGCGAAGTATGCAGTACAAAGGATCAGAAATTATAAGGGAGGTGGCTTGGATTATATTTGACGAGGTTCATTACATGCGAGATAGAGAAAGAGGAGTGGTATGGGAAGAGAGCATAGTTATGGCCCCAAAGAACTCTCGATTTGTGTTCCTCTCTGCTACGGTTCCCAATGCAAAAGAGTTTGCTGATTGGGTTGCAAAGGTTCATCGGCAACCGTGTCATATCGTTTATACTGATTATCGACCAACACCCCTTCAGCATTATATCTTCCCATCTGGAGGCGATGGTCTATACTTGGTGGTGGACGAAAAGGGAAAATTTCGAGAGGATAGCTTTCAGAAAGCTTTGAATGCTCTTGTCCCTGCTAGTGAAGGGGCAAGGAAAAGAGATAACGGGAAATGGCAGAAGGGTGTGGTGGTTGGTAGAGCTAGTGAAGAAAGTGATATATTTAAGATGGTGAAGATGATTATTCAGCGTCAATACGATCCTGTTATAATTTTCAGCTTCAGCAAAAGGGAATGTGAGCTTCTAGCAATGCAGGTTTCAAATATGCTGCCCCTTTTGAAACGTGGAATCGGTGTACATCATTCCGGCTTGCTTCCCATATTGAAGGAAGTAATTGAGATACTATTTCAAGAGGGACTCATCAAGTGTTTGTTTGCTACAGAGACATTCAGCATAGGCTTGAATATGCCTGCAAAAACTGTTGTATTCTCAAATGTTCGTAAATTTGATGGAGATAAATTTAGATGGTTATCTAGTGGAGAGTATATACAGATGAGTGGTCGTGCTGGTCGTCGTGGAATTGATGAACGTGGGATTTGTATCCTTATGGTGGATGAGAAGCTAGAACCTTCTACAGCTAAGATGATGCTCAAGGGTAGTGCTGATTGTTTGAATAGTGCCTTCCATTTAAGCTACAACATGCTCTTGAATCAAATGCGATGCGAAGATGGTGATCCCGAGAATTTGCTTCGAAACTCGTTCTATCAATTCCAAGCTGACCGAGCTATACCTGATCTCAAGAGACAAGCAAAACAGCTTGAAGAGGAGAGGGATTCGATTGTAATTGAAGAAGAAGATAGCCTAGAGAATTACTATTCTCTCATAGAGCAATATAAAAGCTTGAAGAAGGACGTTCGTGATATCGTTCTTTCTCCAAGGTATTGCTTACCATTCTTGCAGCCTGGCAGGCTTGTATGCATCAAGTGCAAAAGGAGTGATATTGATGAAAATTCTGCTGATTCTTTCTCCATCGAGGACCAGGTTACTTGGGGAGTAATTATTAATTTCGAAAGGGTCAAAGGTCTTTCTGAAGATGATGCAAATAAAAAACCAGAGGACGCAAACTATACGGTGGATGTTCTTACAAGATGTGCAGTTCATAGGAATGAAGTTGCGAAGAAAATAATTACGATTGTGCCATTGAAGGAACCTGGAGAACCTGTTGTTGTTTCTGTTCCTGTATCTCAGATTGATAGTTTAAGCAGTGTCCGTTTGGTAATAGCAAAGGATCTTTTGCCATTGGAAGCTCGAGAAAATACCATTAAGAAAGTCTCAGAGGTTCTATCTAGATTTTCTAAAGAAGGGATGCCTCTGTTAGATCCTGAAGAAGATATGAAGATCCAAAGTACCTCGTACAGAAAAGCCGTTCGTCGAATAGAGGCTTTAGAGAACCTGTTTGAGAAGCATGAAATCGCCAAATCTCCTCTTATTGAGCAAAAGCTTAAAGTTCTGCACAAGAAGAAAGAACTCAAGGCCAAAATTAAAGCGATTAAGCGAGCCATGAAAATGACGACGGTATTAGCCTTTAAAGATGAACTTAAAGCGAGGAAAAGGGTTCTCAGGAGACTAGGATATGTGACGAGTGATGATGTTGTGGAGTTGAAAGGGAAAGTAGCTTGCGAAATCAGTAGTGCAGATGAGTTGACTTTGACGGAGCTAGTATTTAGCGGGGTCTTGAAGGAGATTAAGGTAGAAGAGATGATATCACTTCTTTCTTGTTTAGTGTGGCAAGAGAAGCTTCAAGATGCTCAGAAGCCCAGGGATGAACTTGCTTTGCTGTTTACGCAATTGCAAGATACTGCTCGCAGGGTAGCCAAAGTACAACTCGAATGCAAGGTTCAAATTGATGTGGAGAATTTTGTGAGCTCTTTCCGACCCGACATAATGGAGGCTGTGTACGCGTGGGCAAAAGGGTCAAAATTCTACGAGATAATGGAGATAACGCAGGTATTCGAAGGGAGCTTGATAAGGGCCATAAGGAGACTTGAGGAAGTACTTCAACAGCTAATACAAGCTGCAAAATCCATTGGGGAAACCGAGCTCGAAGCCAAGTTTGAAGATGCGGTTTCCAAGATCAAGAGGGATATTGTCTTTGCAGCCTCTCTTTATGTGTAG

Network for GWHGAAZE019461

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	75	222	7.30E-18
PF00271.32	Helicase_C	322	432	9.90E-08
PF13234.7	rRNA_proc-arch	486	761	5.30E-74
PF08148.13	DSHCT	789	958	5.00E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12598	MTR4, SKIV2L2	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0006401	biological_process	RNA catabolic process
GO:0003723	molecular_function	RNA binding
GO:0003724	molecular_function	RNA helicase activity
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.221
	SRR3591706	second leaf	10.320
	SRR3591707	mature leaf	10.178
	SRR3591708	Shoot apex	14.475
	SRR3591709	Stem	12.927
	SRR3591710	White floral bud	15.174
	SRR3591711	White flower	20.740
	SRR3591712	Green floral bud	14.629
	SRR3591713	Yellow flower	17.517
SRP173429	SRR8316895	Juvenile bud stage	10.108
	SRR8316896	Juvenile bud stage	12.539
	SRR8316897	Juvenile bud stage	7.343
	SRR8316894	Third green stage	6.129
	SRR8316900	Third green stage	12.984
	SRR8316901	Third green stage	12.823
	SRR8316898	Complete white stage	3.586
	SRR8316899	Complete white stage	14.021
	SRR8316903	Complete white stage	10.139
	SRR8316902	Silver flowering stage	6.467
	SRR8316904	Silver flowering stage	11.169
	SRR8316905	Silver flowering stage	4.500
	SRR8316906	Gold flowering stage	14.690
	SRR8316907	Gold flowering stage	15.001
	SRR8316908	Gold flowering stage	16.951
SRP132670	SRR6706286	Control	8.770
	SRR6706287	Light intensity 50%	9.859
	SRR6706288	Light intensity 20%	10.005
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.905
	CNS0095593	Slightly white alabastrum(diploid) 2	7.294
	CNS0095594	Slightly white alabastrum(diploid) 3	6.507
	CNS0095595	Whole white alabastrum(diploid) 2	6.157
	CNS0095596	Whole white alabastrum(diploid) 3	6.127
	CNS0095597	Whole white alabastrum(diploid) 4	6.151
	CNS0095598	Silvery flower (diploied) 1	11.952
	CNS0095599	Silvery flower (diploied) 2	9.059
	CNS0095600	Silvery flower (diploied) 3	15.416
	CNS0095601	Golden flower (diploid) 1	10.364
	CNS0095602	Golden flower (diploid) 2	16.338
	CNS0095603	Golden flower (diploid) 3	15.449
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.139
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.915
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.948
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.677
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.357
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.759
	CNS0095610	Silvery flower (diploied) 1	17.365
	CNS0095611	Silvery flower (diploied) 2	16.846
	CNS0095612	Silvery flower (diploied) 3	15.105
	CNS0095613	Golden flower (tetraploid) 1	10.229
	CNS0095614	Golden flower (tetraploid) 2	17.169
	CNS0095615	Golden flower (tetraploid) 3	16.313
CRA001975	CRR073297	Stem 1	10.355
	CRR073298	Stem 2	9.737
	CRR073299	Stem 3	7.465
	CRR073300	Leaf 1	8.780
	CRR073301	Leaf 2	7.650
	CRR073302	Leaf 3	4.912
	CRR073303	Juvenile bud 1	5.266
	CRR073304	Juvenile bud 2	3.356
	CRR073305	Juvenile bud 3	6.689
	CRR073306	Third green 1	2.176
	CRR073307	Third green 2	1.379
	CRR073308	Third green 3	2.720
	CRR073309	Second white 1	2.601
	CRR073310	Second white 2	5.657
	CRR073311	Second white 3	5.111
	CRR073312	Silver flowering 1	3.017
	CRR073313	Silver flowering 2	2.994
	CRR073314	Silver flowering 3	2.692
	CRR073315	Gold flowering 1	2.936
	CRR073316	Gold flowering 2	5.736
	CRR073317	Gold flowering 3	2.056
	CRR073318	Tawny withering 1	6.626
	CRR073319	Tawny withering 2	6.260
	CRR073320	Tawny withering 3	6.719