Gene detail

Detail information of GWHGAAZE019627

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGZ15315.1	4.34211E-38	mevalonate kinase [Platycodon grandiflorus]
Swissprot	tr\|P46086\|KIME_ARATH	2E-28	Mevalonate kinase
trEMBL	tr\|V9PEX2\|V9PEX2_9ASTR	2E-38	Mevalonate kinase {ECO:0000313\|EMBL:AGZ15315.1}
TAIR10	AT5G27450.3	1E-24	mevalonate kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	55666539	55668564	-
GWHAAZE00000005	mRNA	55666539	55668564	-
GWHAAZE00000005	exon	55666539	55666692	-
GWHAAZE00000005	exon	55667179	55667424	-
GWHAAZE00000005	exon	55667823	55667863	-
GWHAAZE00000005	exon	55668422	55668564	-
GWHAAZE00000005	CDS	55668422	55668564	-
GWHAAZE00000005	CDS	55667823	55667863	-
GWHAAZE00000005	CDS	55667213	55667424	-
GWHAAZE00000005	three_prime_UTR	55667179	55667212	-
GWHAAZE00000005	three_prime_UTR	55666539	55666692	-

Transcript Sequence
>GWHTAAZE019649 ATGTGGGTTAGAGCGAGAGCGAGAGCGAGAGCTCCGGGTAAGAATAAGATAATACTCGCCGGCGAACACGCCTTCGTTAACGGATATGCGGCGGTGGCTGCCTCCATTGATCTCCACACCTACGTTTCTCTCTCCTCCTTGGGCTACATAGAAACATATTGTTCTCTTTGTAGCATGACAGTTTATAATGATGATACACTAAATCTCGAGCTCAAGGATATGCCCTTAGAATTTCCGTGGCCAATTGGGAGAATAAAAGAGGCTCTTCCTGAATTGGGTGGTTGTGTTGCTTCATCACCCGGATCTTGCTCATCGGATACCATTAAGTCAATTGCGAGTCTAGTTGAAGAGCGTAATATTCCCGAGGCAAAAGTTGGACTTCTTTGTTGGAGTTAGAGCTTTTCTCTTGCTATACTGCGTCTATCCAAGGGTAGGCCTAGGCGACTTTCTTGCTTTAAGTTGCAATGTGGAACTGCTGTGGATCCGTGTATCACAGTATTGAAGATTCATCGAGAACTTTTTGTGTTATAATGACCTTAGTTCCCCTGTGTTATTCAAACAAAAGAACGAGGAAAAAATAAATT

Network for GWHGAAZE019627

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00869	E2.7.1.36, MVK, mvaK1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Terpenoid backbone biosynthesis	map00900
		Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.214
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.382
	SRR3591711	White flower	0.184
	SRR3591712	Green floral bud	1.801
	SRR3591713	Yellow flower	0.155
SRP173429	SRR8316895	Juvenile bud stage	0.091
	SRR8316896	Juvenile bud stage	0.741
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.104
	SRR8316900	Third green stage	0.731
	SRR8316901	Third green stage	0.764
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.111
	SRR6706287	Light intensity 50%	0.107
	SRR6706288	Light intensity 20%	0.073
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.770
	CNS0095593	Slightly white alabastrum(diploid) 2	0.805
	CNS0095594	Slightly white alabastrum(diploid) 3	1.770
	CNS0095595	Whole white alabastrum(diploid) 2	1.221
	CNS0095596	Whole white alabastrum(diploid) 3	0.926
	CNS0095597	Whole white alabastrum(diploid) 4	0.281
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.193
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.316
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.009
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.036
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.055
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.226
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.075
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.444
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.005
	CRR073299	Stem 3	0.013
	CRR073300	Leaf 1	0.435
	CRR073301	Leaf 2	0.053
	CRR073302	Leaf 3	0.092
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.125
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.057
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.065
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000