Detail information of GWHGAAZE019716


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004296433.11.29217E-44PREDICTED: auxin-responsive protein IAA33-like [Fragaria vesca subsp. vesca]
Swissprottr|Q9FKM7|IAA33_ARATH4E-30Auxin-responsive protein IAA33
trEMBLtr|I3S3X0|I3S3X0_LOTJA3E-41Auxin-induced protein {ECO:0000256|RuleBase:RU004549}
TAIR10AT5G57420.12E-21indole-3-acetic acid inducible 33

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene5900529759005722-
GWHAAZE00000005mRNA5900529759005722-
GWHAAZE00000005exon5900529759005722-
GWHAAZE00000005CDS5900529759005722-
Transcript Sequence

Network for GWHGAAZE019716

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02309.17AUX_IAA591411.70E-10
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyAUX/IAA

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.738
SRR3591706second leaf0.561
SRR3591707mature leaf0.547
SRR3591708Shoot apex7.704
SRR3591709Stem1.038
SRR3591710White floral bud1.313
SRR3591711White flower0.917
SRR3591712Green floral bud4.095
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 1.752
SRR8316896Juvenile bud stage 1.087
SRR8316897Juvenile bud stage 0.308
SRR8316894Third green stage 0.164
SRR8316900Third green stage 0.185
SRR8316901Third green stage 0.266
SRR8316898Complete white stage 0.040
SRR8316899Complete white stage 1.221
SRR8316903Complete white stage 0.302
SRR8316902Silver flowering stage0.038
SRR8316904Silver flowering stage0.146
SRR8316905Silver flowering stage0.040
SRR8316906Gold flowering stage 0.203
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.022
SRP132670SRR6706286Control2.793
SRR6706287Light intensity 50%2.108
SRR6706288Light intensity 20%0.828
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.357
CNS0095593Slightly white alabastrum(diploid) 20.992
CNS0095594Slightly white alabastrum(diploid) 30.299
CNS0095595Whole white alabastrum(diploid) 21.030
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 41.002
CNS0095598Silvery flower (diploied) 11.658
CNS0095599Silvery flower (diploied) 20.770
CNS0095600Silvery flower (diploied) 30.503
CNS0095601Golden flower (diploid) 10.764
CNS0095602Golden flower (diploid) 20.687
CNS0095603Golden flower (diploid) 30.832
CNS0095604Slightly white alabastrum(tetraploid) 14.509
CNS0095605Slightly white alabastrum(tetraploid) 23.209
CNS0095606Slightly white alabastrum(tetraploid) 317.402
CNS0095607Whole white alabastrum(tetraploid) 15.472
CNS0095608Whole white alabastrum(tetraploid) 20.267
CNS0095609Whole white alabastrum(tetraploid) 30.260
CNS0095610Silvery flower (diploied) 10.052
CNS0095611Silvery flower (diploied) 20.356
CNS0095612Silvery flower (diploied) 30.738
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 11.011
CRR073298Stem 22.011
CRR073299Stem 31.760
CRR073300Leaf 10.245
CRR073301Leaf 20.652
CRR073302Leaf 30.414
CRR073303Juvenile bud 10.043
CRR073304Juvenile bud 20.150
CRR073305Juvenile bud 30.278
CRR073306Third green 10.050
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.060
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.066
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.146
CRR073318Tawny withering 10.000
CRR073319Tawny withering 21.532
CRR073320Tawny withering 30.000