Gene detail

Detail information of GWHGAAZE019766

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010656852.1	PREDICTED: villin-4 [Vitis vinifera]
Swissprot	tr\|O65570\|VILI4_ARATH	Villin-4 {ECO:0000303\|PubMed:10631247}
trEMBL	tr\|D7SQC6\|D7SQC6_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI17857.3}
TAIR10	AT4G30160.1	villin 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	60856709	60881605	+
GWHAAZE00000005	mRNA	60856709	60881605	+
GWHAAZE00000005	exon	60856709	60856825	+
GWHAAZE00000005	exon	60858853	60858921	+
GWHAAZE00000005	exon	60859013	60859240	+
GWHAAZE00000005	exon	60859643	60859820	+
GWHAAZE00000005	exon	60859901	60860042	+
GWHAAZE00000005	exon	60860556	60860718	+
GWHAAZE00000005	exon	60860811	60860958	+
GWHAAZE00000005	exon	60861875	60861975	+
GWHAAZE00000005	exon	60862894	60863049	+
GWHAAZE00000005	exon	60865699	60865758	+
GWHAAZE00000005	exon	60870952	60871020	+
GWHAAZE00000005	exon	60871121	60871189	+
GWHAAZE00000005	exon	60871304	60871441	+
GWHAAZE00000005	exon	60872633	60872761	+
GWHAAZE00000005	exon	60874956	60875103	+
GWHAAZE00000005	exon	60875245	60875255	+
GWHAAZE00000005	exon	60875372	60875512	+
GWHAAZE00000005	exon	60876548	60876673	+
GWHAAZE00000005	exon	60876765	60876830	+
GWHAAZE00000005	exon	60880330	60880684	+
GWHAAZE00000005	exon	60881101	60881324	+
GWHAAZE00000005	exon	60881492	60881605	+
GWHAAZE00000005	CDS	60856709	60856825	+
GWHAAZE00000005	CDS	60858853	60858921	+
GWHAAZE00000005	CDS	60859013	60859240	+
GWHAAZE00000005	CDS	60859643	60859820	+
GWHAAZE00000005	CDS	60859901	60860042	+
GWHAAZE00000005	CDS	60860556	60860718	+
GWHAAZE00000005	CDS	60860811	60860958	+
GWHAAZE00000005	CDS	60861875	60861975	+
GWHAAZE00000005	CDS	60862894	60863049	+
GWHAAZE00000005	CDS	60865699	60865758	+
GWHAAZE00000005	CDS	60870952	60871020	+
GWHAAZE00000005	CDS	60871121	60871189	+
GWHAAZE00000005	CDS	60871304	60871441	+
GWHAAZE00000005	CDS	60872633	60872761	+
GWHAAZE00000005	CDS	60874956	60875103	+
GWHAAZE00000005	CDS	60875245	60875255	+
GWHAAZE00000005	CDS	60875372	60875512	+
GWHAAZE00000005	CDS	60876548	60876673	+
GWHAAZE00000005	CDS	60876765	60876830	+
GWHAAZE00000005	CDS	60880330	60880684	+
GWHAAZE00000005	CDS	60881101	60881324	+
GWHAAZE00000005	CDS	60881492	60881605	+

Transcript Sequence
>GWHTAAZE019788 ATGGCTGTTTCAATGAGAGATTTGGATCCAGCTTTTCAAGGAGCTGGTCAGAAGGCGTATCCTTTAAATATTCAGCATGATGTTTCTCTAGGAATTTATGTTACCTTTTACTTGAAGACAACTGCTTTAAAAAGCGGTGCCTTACATCATGATATTCATTATTGGCTTGGTAAAGATACTAGTCAGGATGAATCTGGTACTGCTGCCCTCAAAACTGTCGAGCTGGATGCGGCTCTTGGAGGGCGTGCTGTTCAGTATCGTGAAGTACAAGGCCATGAAACTGAGAAGTTCCTTAGCTATTTCAAACCATGTATCATACCTCAAGTTGGTGGAGTTGCATCTGGGTTTAAGCATGCTGTGGCTGAAGAGCACACCACCCGTTTGTATGTTTGCCAAGGAAAGCATGTTGTTCATGTTCCCTTTGCTCGATCCTCACTCAACCATGATGACATCTTCATCCTCGATACCAAGTCCAAAATTTTCCAGTTTAGTGGTTCCAACTCATCCATTCAAGAGAGGGCTAAAGCACTAGAAGTTGTGCAGTACATTAAAGATACCTATCATGATGGGAAATGTGAAATAGCTGCCATTGAGGATGGGAAGTTGATGGCTGATGCTGAAACTGGGGAATTCTGGGGCTTCTTTGGTGGCTTTGCTCCACTTCCAAGGAAAACAGCATCCAATGATGCTAAAAGTAATGATGCATTGTTTCCTACTAGTAATAGTCTGTTTCGAGTTGAGAATGGGCGGGCAGAATCTACTGAGACTGATACTTTGACAAGGGAGTTGCTTGAGACAAATAAATGCTATATTCTTGATTGTGGGGCAGAAGTGTACGTGTGGATGGGGAGAAATACTTCTCTTGATGAAAGAAAAAGTGCTAGTGGAGCTGCAGAAGAATTAGTGCGTGGCCATGATCGTCCAAAATATCATATAACCCGTGTGATTGAGGGATTTGAGACAGTGATGTTCCGATCAGTGTTTGATTCATGGCCTCAGTCAACAGATGTTGCAGTTTCTGAGGATGGTAGAGGCAAAGTTGCAGCACTTCTGAAACGTCAAGGGATCAATGTGAAGGGACTACTGAAAGCCGCTCCTGCCAAGGAAGAACCTCTGCCATATATTGACTGCTCTGGAAATTTGCAGGTTTGGCGAGTGAATGGCCAAGAGAAGACACTTCTTCCAACATCTGATCAGTCTAAGTTTTACAGTGGGGATTGCTATATCTTTCAATACTCTTATCCTGGAGAAGACAAAGAGGAATACCTTGTAGGAACATGGTTTGGAAAGCAAAGTATTGAGGCTAGGTTTGAGCAGTGGGATGGTTTTGTGGATGATCTGGTAACGGTGGATTGGCAGTGGGAAGACAGAAGTTCAGCTACTTCCCAAGCAAGCAAGATCGTTGAGTCACTGAAGTTTTTGCCTGCTCAGGCTCGCGTTTTCGAGGGAGATGAACCTATCCTGTTCTTTTCAATCTTTCAGAGCTTTATTGTTTTTAAGGGTGGTCTCAGTGACGGATACAAGAAGTACATAGCAGAGAAGGAACTTCCAGATGAGACATATACCAAGGACGGAATTGCATTATTTCGAGTTCAGGGTTCTGGTCCAGAAAATATGCAATCAATTCAAGTTGAACCAGTGGCATCGTCTTTAAATTCCTCGTACTGTTACATTCTACACAGTGATTCCACCGTCTTTACATGGTTTGGAAACCTTACCACCTCAGAGAACCAGGAACTTGTTGAGAGACAGCTGGATCTTATAAAGCCGAGTATACAATCCAAACCACAAAAGGAAGGCACAGAATCTGAACAATTTTGGGACTTGTTAGGCGGGAAATCTGAATACCCCAGCCAGAAGATTGGAAGGGATGCTGAAAGCGATCCTCATTTATTCTCATGCACTTTCTTGAAAGGAGATCTAAAGGTGACAGAGATATACAATTTCAATCAAGATGATTTGATGACTGAAGATGTATTCATCCTGGATTGCCACTCAGAAATCTTTGTTTGGGTGGGGCAACAAGTTGACCCCAAAAATAGAGCGCTTGCTTTAACTATAGGGGAGAAATTCCTTAATCGCGATTTTCTTCTTGAGAAATTATCTATTCAAGCTCCAATATATATTGTAATGGAAGGGAGCGAGCCACAATTCTTCACACGTTTCTTCACCTGGGACTCTGCAAAATCTGCAATGCATGGGAACTCTTTCCAGAGGAAACTTGCTATATTGAAAAACGGGGTTACACCAGCTGTGGATAAGAAACCAAAGAGGAGGACAGGAGGACAGCACGGAGGAAGGTCTGCAGCAGTGCCAGAAAAATCACAGCAGCAGCGTTCGAGAAGTATGTCTTTCAGCCCCGAACGAGTTCGTGTGAGGGGCAGATCTCCAGCTTTCAATGCCCTTGCTGCTACTTTTGAGAATTCAAGGAATCTCTCCACTCCTCCCCCTGTTGGTAGGAGGCCTTTTCCAAAATCTGGTACCCCTACTACTGCTGATAATAATGGTGATGATTCTTCAAAACCCGCTTCTAGGCCCAAATCTACTGTAATAGCATCACTAACCACGACCTTTCAAAAACCTGCCCAAGATAATGTACCCCGTTCTATTAAAGGTAACCCACCAGCCTCAAAGGAGGCACCACAACCCAACCCAGAAAAACCAGAGACAAACTCCAAGGAGAAGTCGATGAGTGGCAGATTAGAAGGCTTGACAATAAAAGAAGATTTGAAAGAGGATGAAGCTGAAGATGAGGAAGGGCTCCAGATATACCCATACGAACGGCTTAAAACGTCTTCTTCGGATCCTGTTACTGATATTGACGTCACCAAGAGAGAGACTTATCTGTCTGCGGAAGAGTTCAAGGGGAAATTGGGGATGACAAAGGAAGCTTTCTATAAGTTACCCAAGTGGAAACAGAATAAGCTTAAAATGGCCCTTCAGTTGTTCTGA

Network for GWHGAAZE019766

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00626.23	Gelsolin	51	98	1.10E-09
PF00626.23	Gelsolin	136	200	4.20E-09
PF00626.23	Gelsolin	255	321	1.40E-09
PF00626.23	Gelsolin	645	717	1.90E-07
PF02209.20	VHP	948	983	2.10E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05768	GSN	Regulation of actin cytoskeleton	map04810
K05768	GSN	Fc gamma R-mediated phagocytosis	map04666

Gene Ontology

GO term	Ontology	Name
GO:0007010	biological_process	cytoskeleton organization
GO:0003779	molecular_function	actin binding
GO:0051015	molecular_function	actin filament binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.591
	SRR3591706	second leaf	17.054
	SRR3591707	mature leaf	21.493
	SRR3591708	Shoot apex	18.110
	SRR3591709	Stem	36.028
	SRR3591710	White floral bud	39.599
	SRR3591711	White flower	35.736
	SRR3591712	Green floral bud	29.573
	SRR3591713	Yellow flower	37.985
SRP173429	SRR8316895	Juvenile bud stage	17.202
	SRR8316896	Juvenile bud stage	22.573
	SRR8316897	Juvenile bud stage	12.711
	SRR8316894	Third green stage	12.379
	SRR8316900	Third green stage	35.381
	SRR8316901	Third green stage	34.956
	SRR8316898	Complete white stage	17.614
	SRR8316899	Complete white stage	47.484
	SRR8316903	Complete white stage	39.400
	SRR8316902	Silver flowering stage	18.089
	SRR8316904	Silver flowering stage	32.443
	SRR8316905	Silver flowering stage	17.286
	SRR8316906	Gold flowering stage	45.122
	SRR8316907	Gold flowering stage	37.218
	SRR8316908	Gold flowering stage	42.761
SRP132670	SRR6706286	Control	30.793
	SRR6706287	Light intensity 50%	34.586
	SRR6706288	Light intensity 20%	34.487
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.808
	CNS0095593	Slightly white alabastrum(diploid) 2	14.292
	CNS0095594	Slightly white alabastrum(diploid) 3	11.655
	CNS0095595	Whole white alabastrum(diploid) 2	12.917
	CNS0095596	Whole white alabastrum(diploid) 3	11.616
	CNS0095597	Whole white alabastrum(diploid) 4	11.163
	CNS0095598	Silvery flower (diploied) 1	20.109
	CNS0095599	Silvery flower (diploied) 2	14.509
	CNS0095600	Silvery flower (diploied) 3	41.505
	CNS0095601	Golden flower (diploid) 1	14.522
	CNS0095602	Golden flower (diploid) 2	35.711
	CNS0095603	Golden flower (diploid) 3	33.489
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.001
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.148
	CNS0095606	Slightly white alabastrum(tetraploid) 3	35.410
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.770
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.973
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.343
	CNS0095610	Silvery flower (diploied) 1	43.314
	CNS0095611	Silvery flower (diploied) 2	47.382
	CNS0095612	Silvery flower (diploied) 3	42.880
	CNS0095613	Golden flower (tetraploid) 1	22.708
	CNS0095614	Golden flower (tetraploid) 2	35.345
	CNS0095615	Golden flower (tetraploid) 3	37.465
CRA001975	CRR073297	Stem 1	29.148
	CRR073298	Stem 2	25.660
	CRR073299	Stem 3	14.378
	CRR073300	Leaf 1	34.244
	CRR073301	Leaf 2	28.176
	CRR073302	Leaf 3	17.798
	CRR073303	Juvenile bud 1	26.127
	CRR073304	Juvenile bud 2	22.314
	CRR073305	Juvenile bud 3	37.876
	CRR073306	Third green 1	25.895
	CRR073307	Third green 2	24.498
	CRR073308	Third green 3	25.927
	CRR073309	Second white 1	8.326
	CRR073310	Second white 2	10.106
	CRR073311	Second white 3	9.616
	CRR073312	Silver flowering 1	5.332
	CRR073313	Silver flowering 2	5.369
	CRR073314	Silver flowering 3	4.179
	CRR073315	Gold flowering 1	5.994
	CRR073316	Gold flowering 2	8.166
	CRR073317	Gold flowering 3	3.901
	CRR073318	Tawny withering 1	19.353
	CRR073319	Tawny withering 2	19.447
	CRR073320	Tawny withering 3	21.074