Gene detail

Detail information of GWHGAAZE019823

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO56729.1	7.9449E-149	hypothetical protein CISIN_1g001612mg [Citrus sinensis]
COG	YP_004775215.1	1E-21	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9C9H7\|RLP12_ARATH	9E-40	Receptor-like protein 12 (Precursor)
trEMBL	tr\|A0A067ENK2\|A0A067ENK2_CITSI	3E-149	Uncharacterized protein {ECO:0000313\|EMBL:KDO56729.1}
TAIR10	AT4G13920.1	1E-34	receptor like protein 50

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	63367894	63369429	+
GWHAAZE00000005	mRNA	63367894	63369429	+
GWHAAZE00000005	exon	63367894	63369429	+
GWHAAZE00000005	CDS	63367894	63369429	+

Transcript Sequence
>GWHTAAZE019845 ATGAGAAATTCAGTCTTCACTCCCATTTTCATTATCACCATAACCACCCTTTGTTGCGTAAGCATCGTTCCAATAAATGCCCAATGTTTGGAGGATCAAAGAAGTTTATTGCCCCAGTTGAAGAACACCCTCAAATTCTATTCTTCATCTTCTACCAAGCTGGTTCAATGGAATCATCATAATAAAGATTGTTGCCTTTGGGAAGGCATCACTTGCAGCAAAGCTGGCCATGTTACTGGCTTAGACTTGAGCGGCAAATTTATCTACGGTGGAATCGACAATTCAAGTAGTCTTTTCAGTCTCCGGTTCCTTCAGAGCTTGAATTTGGCTTACAACGACTTCGACTCTGCACAAATTCCATCCGCATTCATTAACCTTACTAGTTTAACGTACTTGAATTTGGCAAACTCTGGTTTTGGTGGGCAAATCCCAATTGAATTGTCTCAATTGACGAGGTTGGTTACTCTTGATCTCTCCACATTCCTTTCCCTAAAACTCGAGAATCCGAATTTAAATATGTTTTTTCAGAATCTCACACAGCTTACTGAACTCTATCTTGACGGTGTAGAGATATCAGCACAGGGATATGATTGGGGCCAACCAATATCTTCTTCGTTGCCTAATTTGAGAGTGCTGAGTTTATCAAATTGTAATCTTTCAGGCCCTATTGATTCTTCACTTTTGAAACTTCAATTTCTTTCAGTGATTCGTCTCAATGGTAATTATCTACATGGAGCACTTCCGGGAAAGATCTTCCACTCACAAACTCTGCAAATTCTGGATTTATCAGGCAATGCAGAACTGAATGGTTCTTTGCCAGAATTCCCGCAAAATGGAAAATTTACTCAGCTTGCTTATTTGGATTTGTCAGTCAACATGTTTACTGGTGCAATGCCTTGGCTTCAAATGTCCAAAAATCTCACTTACATAGACATCTCTCATAATAATTTGTCGGGCCCGTTCTCTTTCACTCAATTTGAAGGTTTTGTGAATCTTGCATATATTAATTTGGGATACAACTCATTTACGGGGAGGATTCCATCTTCTCTGTTTGGCCTCCCATCTTTGAAGCAATTGCTACTATCCAACAACCATTTTGACGGTTCACCACCTGAAATTCCCAATGCATCATCTTCAATGCTAGAGACACTTGACTTGCAAGGTAACAAGCTAGAAGGTGAAATTCCCTCATCCTTCCTTGACCTCAAAAGTCTTAATTTCCTCTCTCTGTCATCGAATAATCTCAACAGCACTATACAGCTAGAAAATGTTCAAAAACTTGTTAATCTCACCACTCTTGATCTGTCATACAACAACTTCTCGATCAAAACAGGTGGCAACCATTCTGGCTTGTATCCCTTCCCACAATTCATTTATTTGAATTTAGCTTCTTGCAAGCTCCGAAATTTCCCAGATCTAAAAAAGCAAACAGAAATGTCCTATTTGGACCTTTCAGATAATCAAATTGGTGGAGATACCAAATTGGATTTGGAAAGTCGGCAATGGAAGTCTATCGTACTTGAATCTTTCTCTTAA

Network for GWHGAAZE019823

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	31	73	1.40E-06
PF00560.34	LRR_1	208	230	0.93
PF13516.7	LRR_6	253	266	1.5
PF13855.7	LRR_8	325	366	2.30E-07
PF13855.7	LRR_8	381	440	1.50E-07
PF13516.7	LRR_6	481	492	1.3

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.126
	SRR3591706	second leaf	0.036
	SRR3591707	mature leaf	0.095
	SRR3591708	Shoot apex	0.015
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.041
	SRR3591711	White flower	0.041
	SRR3591712	Green floral bud	0.047
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.115
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.058
	SRR8316900	Third green stage	0.056
	SRR8316901	Third green stage	0.023
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.101
	SRR8316903	Complete white stage	0.020
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.011
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.023
	SRR8316908	Gold flowering stage	0.081
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.023
	SRR6706288	Light intensity 20%	0.030
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.029
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.013
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.001
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.066
	CNS0095599	Silvery flower (diploied) 2	0.113
	CNS0095600	Silvery flower (diploied) 3	0.061
	CNS0095601	Golden flower (diploid) 1	0.171
	CNS0095602	Golden flower (diploid) 2	0.041
	CNS0095603	Golden flower (diploid) 3	0.085
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.098
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.039
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.484
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.169
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.058
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.233
	CNS0095610	Silvery flower (diploied) 1	0.081
	CNS0095611	Silvery flower (diploied) 2	0.011
	CNS0095612	Silvery flower (diploied) 3	0.085
	CNS0095613	Golden flower (tetraploid) 1	0.016
	CNS0095614	Golden flower (tetraploid) 2	0.078
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.097
	CRR073298	Stem 2	0.072
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.079
	CRR073301	Leaf 2	0.064
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.003
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.007
	CRR073316	Gold flowering 2	0.074
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000