Gene detail

Detail information of GWHGAAZE020343

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006378407.1	6.3836E-108	alpha-amylase family protein [Populus trichocarpa]
COG	YP_003951996.1	6E-37	alpha-amylase
Swissprot	tr\|Q94A41\|AMY3_ARATH	4E-104	Alpha-amylase 3, chloroplastic (Precursor)
trEMBL	tr\|U5G1G6\|U5G1G6_POPTR	2E-108	Alpha-amylase family protein {ECO:0000313\|EMBL:ERP56204.1}
TAIR10	AT1G69830.1	3E-90	alpha-amylase-like 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	825697	828982	+
GWHAAZE00000006	mRNA	825697	828982	+
GWHAAZE00000006	exon	825697	825946	+
GWHAAZE00000006	exon	826812	826974	+
GWHAAZE00000006	exon	827407	827459	+
GWHAAZE00000006	exon	827567	827702	+
GWHAAZE00000006	exon	827882	827981	+
GWHAAZE00000006	exon	828055	828132	+
GWHAAZE00000006	exon	828320	828442	+
GWHAAZE00000006	exon	828860	828982	+
GWHAAZE00000006	CDS	825697	825946	+
GWHAAZE00000006	CDS	826812	826974	+
GWHAAZE00000006	CDS	827407	827459	+
GWHAAZE00000006	CDS	827567	827702	+
GWHAAZE00000006	CDS	827882	827981	+
GWHAAZE00000006	CDS	828055	828132	+
GWHAAZE00000006	CDS	828320	828442	+
GWHAAZE00000006	CDS	828860	828982	+

Transcript Sequence
>GWHTAAZE020365 ATGCTTCTCTCATCAGAAGGAGCCCATACTAAGGTTGAAGACAGCATTGGTGACATAGGAGAACCTAATCAGCAAAAGAGGCTCCTCAATGGCTTCCATGAAGAGCTTTCTATCGTAAAAGAAACTATTTTTGATAACTCTCTGAGTATTTCTGTCAAAAGATGCCCAGATACAGCAAACAATCTTTCGTACATAGAAACTGATCTACCCGGAGATAATGTTGTGCACTGGGGAGTTCGCAAAGATGAGGTGAAGAGCAAAGAAGCACAAGAAGTCATCCTTCAAGAAATCGAAAAGCTGGCGGCAGAGGCCTATAGTATCTTCAGAAGCTCTGTTCCAACATTTTCAGAGATTGCTGTCTCGGAAACTGAGGCAGTAGAACCTCCTGTACGTGAAGATATGTTCAGGAACAGGTATGGTAGTATTGACGAGTTGAAGGTTCTTGTCAAGGGATTCCATGAAGTTGCAATTGTTGCTGATGATCCACATTTCCAAGGAAGGGGAAATAAGAGTAGTGGAGACAATTTCCATGCTGCTCCAAATATTGGTCATTCTCAAGAATTTGCGAGGAATGATCTAAAAGAGTGGTCATGCTGGATGAGGAAAGAAATCGGGTATGATGGATGGAGGCTTGATTTTGTTAGGGGATTTTGGGGTGGTTATATGAAGGACTACACAAATGCAAGTGAGACTTACTTTGCTAGAATTGTTGACTGGATTAGTGCTACCAGTGGAACTGCTGGTGCATTTGATGTCACTACAAAAGGAATTCTTCATGCTGCACTTGAAAGATGTGAATACTGGCGTCTATCGAATCACAAGGGAAAACCTCCAGGTGTTGTTGGCTGGTGGCCATCTCGGGCTGTTACCTTCATAGAGAACCATGATACAGATTCTACTCAGGGCCATTGGAGATTTCCTGGAACACCTTCAGTTTTCTATGATCACATTTTCTCTCACTACCAATCCGAAATTTCAGCACTTATCTCCATCAGAAACCGAAACAAATTCACTGCAGGAGTATAG

Network for GWHGAAZE020343

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01176	AMY, amyA, malS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Pancreatic secretion	map04972
		Carbohydrate digestion and absorption	map04973

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.065
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.143
	SRR3591708	Shoot apex	0.019
	SRR3591709	Stem	0.010
	SRR3591710	White floral bud	0.201
	SRR3591711	White flower	0.436
	SRR3591712	Green floral bud	0.157
	SRR3591713	Yellow flower	0.604
SRP173429	SRR8316895	Juvenile bud stage	0.082
	SRR8316896	Juvenile bud stage	0.555
	SRR8316897	Juvenile bud stage	0.009
	SRR8316894	Third green stage	0.425
	SRR8316900	Third green stage	0.516
	SRR8316901	Third green stage	0.971
	SRR8316898	Complete white stage	0.446
	SRR8316899	Complete white stage	1.625
	SRR8316903	Complete white stage	0.123
	SRR8316902	Silver flowering stage	1.308
	SRR8316904	Silver flowering stage	0.502
	SRR8316905	Silver flowering stage	0.116
	SRR8316906	Gold flowering stage	0.257
	SRR8316907	Gold flowering stage	0.227
	SRR8316908	Gold flowering stage	0.144
SRP132670	SRR6706286	Control	0.068
	SRR6706287	Light intensity 50%	0.288
	SRR6706288	Light intensity 20%	0.236
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.071
	CNS0095593	Slightly white alabastrum(diploid) 2	0.038
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.034
	CNS0095596	Whole white alabastrum(diploid) 3	0.302
	CNS0095597	Whole white alabastrum(diploid) 4	0.019
	CNS0095598	Silvery flower (diploied) 1	0.799
	CNS0095599	Silvery flower (diploied) 2	0.015
	CNS0095600	Silvery flower (diploied) 3	0.970
	CNS0095601	Golden flower (diploid) 1	0.454
	CNS0095602	Golden flower (diploid) 2	0.018
	CNS0095603	Golden flower (diploid) 3	0.663
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.081
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.419
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.026
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.222
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.099
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.211
	CNS0095610	Silvery flower (diploied) 1	0.027
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.016
	CNS0095613	Golden flower (tetraploid) 1	0.035
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.020
CRA001975	CRR073297	Stem 1	0.400
	CRR073298	Stem 2	0.190
	CRR073299	Stem 3	0.015
	CRR073300	Leaf 1	0.258
	CRR073301	Leaf 2	0.275
	CRR073302	Leaf 3	0.834
	CRR073303	Juvenile bud 1	0.178
	CRR073304	Juvenile bud 2	0.077
	CRR073305	Juvenile bud 3	0.290
	CRR073306	Third green 1	0.037
	CRR073307	Third green 2	0.063
	CRR073308	Third green 3	0.050
	CRR073309	Second white 1	0.052
	CRR073310	Second white 2	0.104
	CRR073311	Second white 3	0.113
	CRR073312	Silver flowering 1	0.073
	CRR073313	Silver flowering 2	0.018
	CRR073314	Silver flowering 3	0.027
	CRR073315	Gold flowering 1	0.006
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.006
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.138
	CRR073320	Tawny withering 3	0.057