Gene detail

Detail information of GWHGAAZE020383

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002263190.1	0	PREDICTED: oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic-like [Vitis vinifera]
COG	YP_007670867.1	3E-108	coproporphyrinogen III oxidase
Swissprot	tr\|P35055\|HEM6_SOYBN	0	Oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic (Precursor)
trEMBL	tr\|K4CX44\|K4CX44_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc10g005110.2.1}
TAIR10	AT1G03475.1	4E-170	Coproporphyrinogen III oxidase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	2904095	2910422	+
GWHAAZE00000006	mRNA	2904095	2910422	+
GWHAAZE00000006	exon	2904095	2904475	+
GWHAAZE00000006	exon	2905963	2906038	+
GWHAAZE00000006	exon	2907378	2907472	+
GWHAAZE00000006	exon	2907818	2907901	+
GWHAAZE00000006	exon	2909036	2909123	+
GWHAAZE00000006	exon	2909261	2909385	+
GWHAAZE00000006	exon	2909485	2909583	+
GWHAAZE00000006	exon	2910088	2910422	+
GWHAAZE00000006	CDS	2904095	2904475	+
GWHAAZE00000006	CDS	2905963	2906038	+
GWHAAZE00000006	CDS	2907378	2907472	+
GWHAAZE00000006	CDS	2907818	2907901	+
GWHAAZE00000006	CDS	2909036	2909123	+
GWHAAZE00000006	CDS	2909261	2909385	+
GWHAAZE00000006	CDS	2909485	2909583	+
GWHAAZE00000006	CDS	2910088	2910156	+
GWHAAZE00000006	three_prime_UTR	2910157	2910422	+

Transcript Sequence
>GWHTAAZE020405 ATGATCGAAAAGGAAACTCCCGAGACCAACCGCCCGGTCACATTCTTGCGCGAGGATTCTGCATCGAATTCCAGCACTTCCGTCAGAGCTCGGTTCGAGAAGATGATCAGGGAGGCGCAGGACAGTGTATGTGCCGCGATCGAGGCTGCCGACGGAGGCGGTAAATTCAAGGAGGATGTGTGGTCGAGACCCGGGGGTGGCGGGGGGATAAGTAGGGTTTTGCAGGAGGGGAAGGTGTGGGAGAAGGCCGGGGTTAATGTGTCTGTTGTTTATGGTATTATGCCTCCTGAAGCTTATAGGGCAGCTAAGCCTGTTAGTAATGGGAGTAATGTTGCTGCTCCTCGTGATCCTGTTCCTTTTTTCGCTGCTGGGATTAGCTCGGTGTTACATCCGTGGAACCCTTTTGCACCGACACTGCATTTCAATTATAGGTATTTTGAGACTGATGCTCCCAAAGATGCTCCAGGAGCGCCACGACAATGGTGGTTCGGTGGCGGTACTGATTTGACTCCTGCTTACATATTTGAGGATGATGTCAAGCACTTCCATTCGGTTCAAAAAAGTGCTTGTGACAAGTTTGACCCTACCTTCTATCCCCGATTTAAGAAATGGTGCGATGATTATTTCTACATTAAGCACCGGGATGAGAGGCGAGGGCTCGGGGGTATATTTTTTGATGATCTTAATGACTACGATCAGGAGATGCTTCTATCCTTCTCTACCGAATGTGCGAATTCTGTGGTTTCTGCGTACATACCTATAATCGAGAAGAGGAAGGATACACCATTTACAGATCAGCACAAGGCATGGCAGCAATTAAGAAGGGGGCACTACGTAGAATTCAACTTGGTTTATGATCGAGGAACAACATTTGGTCTTAAGACTGGAGGCCGGATCGAGAGTATTCTCGTTTCTCTTCCACTAACTGCGCGGTGGGAATATGACCATAAACCGGAAGAGGGGAGTGAAGAATGGAAACTATTGGATGCGTGTATCAACCCCAAGGAATGGATCTGATTATTGTAAAGCGCAATTTATTTATTTTTTAGTTCTTTTTATGATGTTTAACTTTCTGCCTTTTGTTTTCTAGTCTTAGTTGTTTTGGCCGAGGCGTCGATTTAGGGACCAAGTTGAGTGTCGATATATCGATCAAATGTATTCCAATTGTGTTTATGACAGCAATGTTGTAGCTTCTGTTTTATAATTACATTGTTGAACTAGTATAGAATTTGTTTTGTACTTTTTGCAAAATTTCAATATATATGTACTTTTCACAAACAAAA

Network for GWHGAAZE020383

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01218.19	Coprogen_oxidas	32	338	2.50E-133

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00228	CPOX, hemF	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0006779	biological_process	porphyrin-containing compound biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0004109	molecular_function	coproporphyrinogen oxidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	66.014
	SRR3591706	second leaf	99.262
	SRR3591707	mature leaf	41.781
	SRR3591708	Shoot apex	100.693
	SRR3591709	Stem	33.479
	SRR3591710	White floral bud	20.974
	SRR3591711	White flower	32.422
	SRR3591712	Green floral bud	19.514
	SRR3591713	Yellow flower	37.035
SRP173429	SRR8316895	Juvenile bud stage	32.394
	SRR8316896	Juvenile bud stage	29.470
	SRR8316897	Juvenile bud stage	20.418
	SRR8316894	Third green stage	10.596
	SRR8316900	Third green stage	32.570
	SRR8316901	Third green stage	27.762
	SRR8316898	Complete white stage	10.754
	SRR8316899	Complete white stage	26.103
	SRR8316903	Complete white stage	12.837
	SRR8316902	Silver flowering stage	15.566
	SRR8316904	Silver flowering stage	17.175
	SRR8316905	Silver flowering stage	10.052
	SRR8316906	Gold flowering stage	31.447
	SRR8316907	Gold flowering stage	31.598
	SRR8316908	Gold flowering stage	25.797
SRP132670	SRR6706286	Control	34.307
	SRR6706287	Light intensity 50%	34.047
	SRR6706288	Light intensity 20%	33.704
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.924
	CNS0095593	Slightly white alabastrum(diploid) 2	26.528
	CNS0095594	Slightly white alabastrum(diploid) 3	23.317
	CNS0095595	Whole white alabastrum(diploid) 2	22.123
	CNS0095596	Whole white alabastrum(diploid) 3	20.849
	CNS0095597	Whole white alabastrum(diploid) 4	16.349
	CNS0095598	Silvery flower (diploied) 1	49.260
	CNS0095599	Silvery flower (diploied) 2	47.269
	CNS0095600	Silvery flower (diploied) 3	32.006
	CNS0095601	Golden flower (diploid) 1	50.729
	CNS0095602	Golden flower (diploid) 2	35.672
	CNS0095603	Golden flower (diploid) 3	33.533
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.653
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.006
	CNS0095606	Slightly white alabastrum(tetraploid) 3	43.012
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.729
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.462
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.576
	CNS0095610	Silvery flower (diploied) 1	44.304
	CNS0095611	Silvery flower (diploied) 2	38.416
	CNS0095612	Silvery flower (diploied) 3	43.801
	CNS0095613	Golden flower (tetraploid) 1	36.300
	CNS0095614	Golden flower (tetraploid) 2	44.027
	CNS0095615	Golden flower (tetraploid) 3	33.652
CRA001975	CRR073297	Stem 1	36.103
	CRR073298	Stem 2	32.872
	CRR073299	Stem 3	35.028
	CRR073300	Leaf 1	16.954
	CRR073301	Leaf 2	17.536
	CRR073302	Leaf 3	17.815
	CRR073303	Juvenile bud 1	16.327
	CRR073304	Juvenile bud 2	14.906
	CRR073305	Juvenile bud 3	16.710
	CRR073306	Third green 1	12.165
	CRR073307	Third green 2	10.214
	CRR073308	Third green 3	11.568
	CRR073309	Second white 1	23.788
	CRR073310	Second white 2	20.110
	CRR073311	Second white 3	17.137
	CRR073312	Silver flowering 1	22.550
	CRR073313	Silver flowering 2	25.854
	CRR073314	Silver flowering 3	23.502
	CRR073315	Gold flowering 1	45.717
	CRR073316	Gold flowering 2	60.390
	CRR073317	Gold flowering 3	40.740
	CRR073318	Tawny withering 1	24.233
	CRR073319	Tawny withering 2	23.429
	CRR073320	Tawny withering 3	31.405