Gene detail

Detail information of GWHGAAZE020435

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP10055.1	0	unnamed protein product [Coffea canephora]
COG	YP_001958461.1	5E-18	hypothetical protein Aasi_1443
Swissprot	tr\|Q9LX29\|ACR4L_ARATH	0	Serine/threonine-protein kinase-like protein ACR4 (Precursor)
trEMBL	tr\|A0A068UND9\|A0A068UND9_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_42 {ECO:0000313\|EMBL:CDP10055.1}
TAIR10	AT3G59420.1	0	crinkly4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	5329462	5331986	+
GWHAAZE00000006	mRNA	5329462	5331986	+
GWHAAZE00000006	exon	5329462	5331106	+
GWHAAZE00000006	exon	5331181	5331986	+
GWHAAZE00000006	CDS	5329462	5331106	+
GWHAAZE00000006	CDS	5331181	5331986	+

Transcript Sequence
>GWHTAAZE020457 ATGTCCTCCATTGCCATTTCCTATGGTGAAAATGGTCCTGCTTTTTGTGGTTTGCAATCTGATGGGTCTCACCTAGTGAGCTGTTATGGCTCGAATTCGGCTATAATCTATGCAACCCCGGCTCATTACCCTTTCCTGGGGTTAACAGCTGGCAATGGCTTTGTGTGTGGGCTTTTACTGGATACAAATCAACCTTATTGTTGGGGGAGTAGTGGCCTTGTTCAAATGGGTGTTCCTCAACCCATGATCAAAGGCTCCGAGTACATTGAACTAAGTGCAGGTGACCACCATTTGTGTGGTTTGCGAAAACCCTTGACTGGTAAACGAAGAAATTTCGCTCTTGTTGATTGTTGGGGCTATAACATGACCAAGAACTACGTGTTTGATGGGCAGATCCAGTCGATCTCGGCTGGTGCAGAGTTCAATTGTGGGTTGTTTGCTCAAAATAGGACTGTTTTTTGTTGGGGTGATCAAACTAGTAGTAGGGTGATTAGCCTAATCCCCAAGGAGATGAGGTTTCAAAAGATTTCAGCCGGTGGGTTTCATGTATGTGGGATTTTAGAGGCGGTTGGATCTAGTTCGAGGGTGTTTTGTTGGGGTAGAAGCTTGGCTCTTGAGGAGGAACTCATTGTGGCTCACTCGAGCGAACAAAATGTCGATTTGTCTCCAAGTGATCCAATGGTTACAGTTGTAGGGGCAAGGTTCTATGCATGTGGGATCAAGAGTTATGATCATGGGGTGATTTGCTGGGGCTATCGGGTGGATCAAAGCACTTTGCCCCCTAATGCCGTGAGGCTTTATGAACTTGCAGCTGGGGATTATTTTGCTTGTGGGGTTCTTGCTGAGAAATCTTTGCTACCTGTTTGTTGGGGAAAGGGATTCCCCTCTTCTTTGCCCTTGGCCGTTTCTCCCGGACTTTGCAAGCCAAATTCGTGTGGGCCCGGTTTCTACGAGTTGATCAAAAATGATAGTATTGCACCTTGTAAGTCACCAGGCTCGCGTATTTGTCTTCCGTGTACTAGCGGTTGCCCCGTTGAAATGTACCAAAAGTCGGAATGCACTTCGACTGCTGATATGAAGTGCGAGTACAATTGCTCAAGTTGCTCCTCGCAAGAATGCTTTACAAATTGTACCAATTCAACACCCACTGCTGCAAAAAAGAATGGGAGGTTTTGGTCACTTCAGTTGCCTGTCATTGTTGCCGAGATTGCATTTGCAGTGTTCTTGGTGAGTGTCGTTTCTTTGACCGCGATTCTATACGTTCGGTACAAGTTGAGAAACTGTCAGTGCTCGGTAAAAGCCTTGAAACCCACAAACAACAATGGGAATGGCTCTTCTTTCCAAAAAGATGTGGGAAAAGTTCGGCCGGATTTTGATGAGCTCAAGATTAGTAGAGCTCAAATGTTTACTTACAAGGAGCTCGAGAGAGCTACTGGTGGTTTTAAAGAAGAATCTCAAGTAGGGAAGGGAAGCTTTTCGTGTGTATTCAAGGGGGTTTTAAAGGATGGAACCATAGTGGCAGTTAAAAGGGCTATAATGTCACCAGACATGAAGAAACACTCGAAAGAGTTCCACACGGAGCTCGATCTACTCTCAAGACTAAATCATGCCCACTTGCTCAATCTCCTCGGTTATTGTGAAGAAGAACTCAAGGAGCAATTGGATTGGGTAAGGAGAGTCACTATAGCTGTTCAAGCGGCTCGAGGGATCGAATATCTACATGGTTATGCATGCCCACCAGTGATTCACCGCGATATCAAATCCTCAAACATCCTCATAGACGAAGAACACAATGCCCGAGTAGCCGATTTTGGTCTATCTTTGCTCGGGCCGGCTAATAGTAGCTCTCCATTGGCTGAGCTGCCCGCCGGAACTCTCGGGTATCTAGACCCTGAGTACTACCGGCTTCACTACCTGACTACCAAATCCGACGTGTATAGCTTCGGTGTATTACTTCTCGAAATCTTGAGCGGACGAAAGGCCATCGATATGCAATTTGAAGAAGGGAATATAGTTGAATGGGCAGTCCCTTTGATCAAAGCTGGGGATATACAAGCGATTTTGGACCCGATTTTGAAAACCCCTTCAGATATCGAAGCGTTGAAGAGGATAGCAAATGTGGCAAGCAAATGTGTGAGAATGAGGGGGAAAGATAGACCGTCGATGGACAAAGTGACAACGGCATTGGAGCGAGCTTTGGCTCTTTTAATGGGAAGTCCGAGTAACGAGCAACCTATTTTGCCAACCGAGGTGGTTTTGGGGAGTAGTAGAATGCACAAAAAGTCTTCACAAAGATCATCAAATCGATCTGAAACTGATGTTGTTGAAGCTGAGGATCAAAGGATTGAGTTTAGAGCTCCTTCTTGGATTACTTTTCGAGTGTGGCCTCTTCTCAAAGAAGGAAATCTTCGGTTTCTGAGGCGGATGTTGAAGGGAAAAATGCAGAAATGA

Network for GWHGAAZE020435

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	481	549	3.10E-09
PF00069.26	Pkinase	561	725	1.50E-23

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CR4L

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.025
	SRR3591706	second leaf	7.645
	SRR3591707	mature leaf	2.409
	SRR3591708	Shoot apex	13.098
	SRR3591709	Stem	0.636
	SRR3591710	White floral bud	2.084
	SRR3591711	White flower	1.251
	SRR3591712	Green floral bud	7.568
	SRR3591713	Yellow flower	0.116
SRP173429	SRR8316895	Juvenile bud stage	3.423
	SRR8316896	Juvenile bud stage	5.412
	SRR8316897	Juvenile bud stage	1.810
	SRR8316894	Third green stage	3.578
	SRR8316900	Third green stage	9.060
	SRR8316901	Third green stage	10.004
	SRR8316898	Complete white stage	0.122
	SRR8316899	Complete white stage	5.261
	SRR8316903	Complete white stage	0.585
	SRR8316902	Silver flowering stage	0.055
	SRR8316904	Silver flowering stage	0.042
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.064
	SRR8316907	Gold flowering stage	0.019
	SRR8316908	Gold flowering stage	0.041
SRP132670	SRR6706286	Control	11.602
	SRR6706287	Light intensity 50%	12.772
	SRR6706288	Light intensity 20%	13.843
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.382
	CNS0095593	Slightly white alabastrum(diploid) 2	3.125
	CNS0095594	Slightly white alabastrum(diploid) 3	2.390
	CNS0095595	Whole white alabastrum(diploid) 2	3.059
	CNS0095596	Whole white alabastrum(diploid) 3	1.542
	CNS0095597	Whole white alabastrum(diploid) 4	1.787
	CNS0095598	Silvery flower (diploied) 1	2.861
	CNS0095599	Silvery flower (diploied) 2	1.730
	CNS0095600	Silvery flower (diploied) 3	1.002
	CNS0095601	Golden flower (diploid) 1	2.880
	CNS0095602	Golden flower (diploid) 2	1.047
	CNS0095603	Golden flower (diploid) 3	1.404
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.235
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.479
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.379
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.176
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.171
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.504
	CNS0095610	Silvery flower (diploied) 1	1.395
	CNS0095611	Silvery flower (diploied) 2	1.994
	CNS0095612	Silvery flower (diploied) 3	0.655
	CNS0095613	Golden flower (tetraploid) 1	0.125
	CNS0095614	Golden flower (tetraploid) 2	0.788
	CNS0095615	Golden flower (tetraploid) 3	0.080
CRA001975	CRR073297	Stem 1	10.270
	CRR073298	Stem 2	10.789
	CRR073299	Stem 3	9.472
	CRR073300	Leaf 1	17.789
	CRR073301	Leaf 2	13.105
	CRR073302	Leaf 3	14.417
	CRR073303	Juvenile bud 1	10.048
	CRR073304	Juvenile bud 2	6.769
	CRR073305	Juvenile bud 3	10.415
	CRR073306	Third green 1	1.704
	CRR073307	Third green 2	0.990
	CRR073308	Third green 3	1.501
	CRR073309	Second white 1	0.016
	CRR073310	Second white 2	0.221
	CRR073311	Second white 3	0.058
	CRR073312	Silver flowering 1	0.074
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.080
	CRR073316	Gold flowering 2	0.677
	CRR073317	Gold flowering 3	1.351
	CRR073318	Tawny withering 1	0.032
	CRR073319	Tawny withering 2	0.196
	CRR073320	Tawny withering 3	0.108