Gene detail

Detail information of GWHGAAZE020489

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP14667.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q67YI9\|EPN2_ARATH	0	Clathrin interactor EPSIN 2
trEMBL	tr\|A0A068V290\|A0A068V290_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_90 {ECO:0000313\|EMBL:CDP14667.1}
TAIR10	AT2G43160.3	3E-65	ENTH/VHS family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	6407671	6415148	+
GWHAAZE00000006	mRNA	6407671	6415148	+
GWHAAZE00000006	exon	6407671	6407673	+
GWHAAZE00000006	exon	6407791	6407870	+
GWHAAZE00000006	exon	6407955	6408033	+
GWHAAZE00000006	exon	6409484	6409567	+
GWHAAZE00000006	exon	6409669	6409814	+
GWHAAZE00000006	exon	6409906	6409932	+
GWHAAZE00000006	exon	6411113	6411463	+
GWHAAZE00000006	exon	6411822	6411863	+
GWHAAZE00000006	exon	6411990	6412097	+
GWHAAZE00000006	exon	6412181	6412389	+
GWHAAZE00000006	exon	6412956	6413152	+
GWHAAZE00000006	exon	6413667	6414567	+
GWHAAZE00000006	exon	6414670	6415148	+
GWHAAZE00000006	CDS	6407671	6407673	+
GWHAAZE00000006	CDS	6407791	6407870	+
GWHAAZE00000006	CDS	6407955	6408033	+
GWHAAZE00000006	CDS	6409484	6409567	+
GWHAAZE00000006	CDS	6409669	6409814	+
GWHAAZE00000006	CDS	6409906	6409932	+
GWHAAZE00000006	CDS	6411113	6411463	+
GWHAAZE00000006	CDS	6411822	6411863	+
GWHAAZE00000006	CDS	6411990	6412097	+
GWHAAZE00000006	CDS	6412181	6412389	+
GWHAAZE00000006	CDS	6412956	6413152	+
GWHAAZE00000006	CDS	6413667	6414567	+
GWHAAZE00000006	CDS	6414670	6415148	+

Transcript Sequence
>GWHTAAZE020511 ATGGTTCTCGATGCTACTAGTAATGAGCCCTGGGGTCCTCATGGATCGCATCTTGCTGATATTGCGCAGGCTACAAGAAACTATCATGAATACCAGATGATCATGTCAGTGCTCTGGAAGCGTATTAATGATACTGGAAAAAATTGGCGGCATGTATACAAGGCTTTGACTGTTTTGGAGTACTTGGTAGCCAACGGGTCAGAGCGTGTCATAGAAGATATCAGGGAACATGCATACCAAATATCGACGCTTTCCGAATTTCAATACATTGATTCCAGTGGGAGGGATCAGGGAAGCAATGTTAGGAAGAAGTCTCAGAGTCTTGTTGTTCTAGTTAATGATAAAGAAAGAATACAAGAAGTTCGGCAGAAGGCCGCTGCTAACAGGGAAAACCGGGCAGCTTTACCTGTTCTCATGATGTATCGCAACACTTCAGCTGGTGGTATGTATAGGCCAGGCTCATATTCAAGCACAGGAGGATATGGTGACAGATACGATGATGACCGCTATGGAAGCAGAGATGAAGACCGGAATGGTTATGGAAGAGAAAGAGATGATGACAGATATGGTAGGTATGGGGATTCATATGGTCGTGATGGTGATCGTTATGGTAGAGATTATGAGGATCGCAGCAACCGAGATGGCTACAGGGATGATGATTATCGGGGAAGAAGTCGAAGCGATGATGACTACAACTATGGTTCAAGAAGTAGAAGTGCTGATAGGGATAGGGATCGAGCTTATGAAGATGATGGTCAATATTCATCTAGAGGAAGTAATGCAAGAGGTGATGATCGATCTCAGGATGGAAGTGTAACTGGCAAGCCGATTGAGCGAAAATTTTCTGAACAAAATCTGGATGCTCCTCCCACTTATGAAGAGGCTGTGGCTGAGGTTCGTAGCCCTGTTCACAGTGAGAGGGATGGAGAAATTCCAGCGGCACTTGCTCCTCCTAAATCATCATCTCCTGTGAACCCTAATAATCAAGCAACCATTGCTCCTACCACTCCTGCAGCTGCAGCTCCAGCTCCAGCTCCATCGCCAGCTCCAGCTCCAGCTCCATCGCCAGCTCCAGCAAACAAGGAAAGTGATGGCTTTGATGAATTTGATCCACGTGGTTCATTTTCAGCTGCCCCACCTACTTCAAATGGTGCTGAAATGGACTTGCTTGGTTCTCTGTCTGATTCATTTTCTTCCAACTCAATGGCTATTGTGCCAGCTACTACAACTACAACAGACACAACTGCTGAAACTGATACCTTTGCAAACTCTGGTTCTGGACAAACATTCCTGGCAACATCTTCGGCATCCACTGTACCTAATCAGGCGTTTGACGATCCATTTGGTGATGGCCCTTTCCGAGCTATCCCTTCTACGAACGGTGCCTCTGCCCAACCCGTGAATGTTGACTCCTCGTCTTCCTTCCAATCTAGTGCAAATCAGAGTTCTGAACAAACCCAGAAGATGGAGATGAATAATAACTTTGGGTTTGGGGATGCATTTTCCAGTGGACCTTACAACACATCAGCCAGTACTCAACTTGTTCCAAGTCAGCAATATTTGCACCAGGAGCCGTCAAATACGAATCAAGAAATTGACATTTTAGCTGATATTCTTCCACCTTCTGGACCGTCACAGACCAGTTTTCCATCTCAATCCAGTCAGCCTGCATCCCTGACGGGGTTCCCTGCTCATCAACAGGGGCAACCACCTGCATTGCAGTCGGGTGGTTTCCTGTCTCAGCCCACATCTCAGAGTAGTTTCCCAGCTCAAATGGGTCAGACAAATTTTCCTCCAGTTCAAATGGGTGGTCAACCTCCTTCCATGACTGGATTTCCTCCTCAAGGCGGTCAACTTCCTGCATCATCACCCCTTGCAGGTTTTCCGTCTCAAATGACCCCTTCTGTGTCTCAGGCAGGCTTTCTTCCTCAACCTGGCGGAATGCCAAACCCTAATTTTTATGGGAATATCCAGGGGGGATCATATGGTCCCCCACCCACGTCCCAGATTCGTACTACTACTGGACCAGCTGCTGCACAATATAACAACACTAGCAGCAACTTCCTTTCGCAGTCAGGTGCTTCCATGCCCTCCTCACAGCCAACCGCTTCTTTAACTTCTCTTGCTATAGTTCCTCAACCAGCAGCCAAAGACAAGTTTGAGACCAAATCATCAGTTTGGGCTGATACGCTCAACCGAGGATTAGTTAACTTGAACATATCTGGACCCAAGACAAATCCGTTGGCTGATATTGGAGTCGACTTTGACGCCATAAATAGGAGGGAGAAGAGGATGGAAAAACCTAGTGCAGCCCCTGTCGTTTCGAACGTGACTATGGGCAAAGCAATGGGCTCTGGTTCTGGGATGGGGCGTGCTGGTGCTGGTGCTCTAAGGGCTGCTCCGACAAACCCCATGATGGGCTCTTCTGGTATGGGTATGGGTATAGGCATGGGTGGGGCCCCGCCTGGTGGTGCAGGTATTGTCATGGGAGGTTATGGCGGCAGAGTAAATCATCAGCAGCAGCCCCCCATGGGTGGTATGGGTATGGGGATGAACATGGGCATGGGCCAAGGAGGGTTCCAGATGCAGCAGCAGCAGCAGCCACCAGCAGGGTTTCCTCCCGGAACTACCAACATGCCTGGAGGAGGTTATAATCCCATGTCGGGAGTCGGCGCCTATGGGCAACCATATGGTGGCTACCGATGA

Network for GWHGAAZE020489

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01417.21	ENTH	2	117	7.30E-45

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12471	EPN	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	97.644
	SRR3591706	second leaf	34.544
	SRR3591707	mature leaf	25.146
	SRR3591708	Shoot apex	37.759
	SRR3591709	Stem	99.625
	SRR3591710	White floral bud	95.579
	SRR3591711	White flower	81.227
	SRR3591712	Green floral bud	78.964
	SRR3591713	Yellow flower	70.043
SRP173429	SRR8316895	Juvenile bud stage	29.737
	SRR8316896	Juvenile bud stage	44.183
	SRR8316897	Juvenile bud stage	20.543
	SRR8316894	Third green stage	21.877
	SRR8316900	Third green stage	64.731
	SRR8316901	Third green stage	63.373
	SRR8316898	Complete white stage	27.549
	SRR8316899	Complete white stage	64.120
	SRR8316903	Complete white stage	66.593
	SRR8316902	Silver flowering stage	33.846
	SRR8316904	Silver flowering stage	48.492
	SRR8316905	Silver flowering stage	24.395
	SRR8316906	Gold flowering stage	72.205
	SRR8316907	Gold flowering stage	72.013
	SRR8316908	Gold flowering stage	76.368
SRP132670	SRR6706286	Control	82.870
	SRR6706287	Light intensity 50%	92.929
	SRR6706288	Light intensity 20%	93.355
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.385
	CNS0095593	Slightly white alabastrum(diploid) 2	35.844
	CNS0095594	Slightly white alabastrum(diploid) 3	28.868
	CNS0095595	Whole white alabastrum(diploid) 2	37.355
	CNS0095596	Whole white alabastrum(diploid) 3	36.801
	CNS0095597	Whole white alabastrum(diploid) 4	41.739
	CNS0095598	Silvery flower (diploied) 1	32.150
	CNS0095599	Silvery flower (diploied) 2	28.387
	CNS0095600	Silvery flower (diploied) 3	96.309
	CNS0095601	Golden flower (diploid) 1	24.943
	CNS0095602	Golden flower (diploid) 2	83.847
	CNS0095603	Golden flower (diploid) 3	82.702
	CNS0095604	Slightly white alabastrum(tetraploid) 1	47.075
	CNS0095605	Slightly white alabastrum(tetraploid) 2	39.637
	CNS0095606	Slightly white alabastrum(tetraploid) 3	94.733
	CNS0095607	Whole white alabastrum(tetraploid) 1	44.468
	CNS0095608	Whole white alabastrum(tetraploid) 2	44.173
	CNS0095609	Whole white alabastrum(tetraploid) 3	82.203
	CNS0095610	Silvery flower (diploied) 1	85.051
	CNS0095611	Silvery flower (diploied) 2	84.132
	CNS0095612	Silvery flower (diploied) 3	121.602
	CNS0095613	Golden flower (tetraploid) 1	47.890
	CNS0095614	Golden flower (tetraploid) 2	78.355
	CNS0095615	Golden flower (tetraploid) 3	97.117
CRA001975	CRR073297	Stem 1	64.480
	CRR073298	Stem 2	67.819
	CRR073299	Stem 3	64.137
	CRR073300	Leaf 1	87.699
	CRR073301	Leaf 2	79.982
	CRR073302	Leaf 3	62.999
	CRR073303	Juvenile bud 1	87.897
	CRR073304	Juvenile bud 2	75.422
	CRR073305	Juvenile bud 3	128.371
	CRR073306	Third green 1	118.282
	CRR073307	Third green 2	95.668
	CRR073308	Third green 3	107.258
	CRR073309	Second white 1	90.783
	CRR073310	Second white 2	71.650
	CRR073311	Second white 3	86.351
	CRR073312	Silver flowering 1	102.387
	CRR073313	Silver flowering 2	118.311
	CRR073314	Silver flowering 3	88.827
	CRR073315	Gold flowering 1	25.440
	CRR073316	Gold flowering 2	31.677
	CRR073317	Gold flowering 3	35.157
	CRR073318	Tawny withering 1	74.883
	CRR073319	Tawny withering 2	52.381
	CRR073320	Tawny withering 3	81.885