Detail information of GWHGAAZE020499


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIR10AT1G48900.10.0002Signal recognition particle, SRP54 subunit protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene67840986787064+
GWHAAZE00000006mRNA67840986787064+
GWHAAZE00000006exon67840986784210+
GWHAAZE00000006exon67842946784456+
GWHAAZE00000006exon67868016787064+
GWHAAZE00000006CDS67840986784210+
GWHAAZE00000006CDS67842946784456+
GWHAAZE00000006CDS67868016787064+
Transcript Sequence

Network for GWHGAAZE020499

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03106SRP54, ffh Protein export map03060
Bacterial secretion systemmap03070
Quorum sensingmap02024

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.891
SRR3591706second leaf3.256
SRR3591707mature leaf3.253
SRR3591708Shoot apex5.011
SRR3591709Stem4.272
SRR3591710White floral bud12.551
SRR3591711White flower9.808
SRR3591712Green floral bud14.343
SRR3591713Yellow flower12.224
SRP173429 SRR8316895Juvenile bud stage 6.279
SRR8316896Juvenile bud stage 10.802
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 4.977
SRR8316900Third green stage 7.452
SRR8316901Third green stage 11.370
SRR8316898Complete white stage 3.099
SRR8316899Complete white stage 8.517
SRR8316903Complete white stage 5.870
SRR8316902Silver flowering stage3.672
SRR8316904Silver flowering stage3.297
SRR8316905Silver flowering stage2.472
SRR8316906Gold flowering stage 6.725
SRR8316907Gold flowering stage 7.755
SRR8316908Gold flowering stage 2.528
SRP132670SRR6706286Control7.741
SRR6706287Light intensity 50%8.837
SRR6706288Light intensity 20%9.049
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.489
CNS0095593Slightly white alabastrum(diploid) 217.587
CNS0095594Slightly white alabastrum(diploid) 320.253
CNS0095595Whole white alabastrum(diploid) 212.180
CNS0095596Whole white alabastrum(diploid) 310.041
CNS0095597Whole white alabastrum(diploid) 414.559
CNS0095598Silvery flower (diploied) 116.212
CNS0095599Silvery flower (diploied) 213.185
CNS0095600Silvery flower (diploied) 34.254
CNS0095601Golden flower (diploid) 110.586
CNS0095602Golden flower (diploid) 23.015
CNS0095603Golden flower (diploid) 33.423
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (diploied) 10.000
CNS0095611Silvery flower (diploied) 20.000
CNS0095612Silvery flower (diploied) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 18.057
CRR073298Stem 25.449
CRR073299Stem 30.649
CRR073300Leaf 15.553
CRR073301Leaf 26.685
CRR073302Leaf 30.382
CRR073303Juvenile bud 10.379
CRR073304Juvenile bud 20.106
CRR073305Juvenile bud 30.987
CRR073306Third green 10.076
CRR073307Third green 20.000
CRR073308Third green 30.115
CRR073309Second white 10.060
CRR073310Second white 20.206
CRR073311Second white 30.237
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.310
CRR073316Gold flowering 21.219
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.588
CRR073319Tawny withering 23.351
CRR073320Tawny withering 31.331