Detail information of GWHGAAZE020518


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAFO84072.13.70695E-84alpha-amylase [Actinidia chinensis]
Swissprottr|Q94A41|AMY3_ARATH2E-65Alpha-amylase 3, chloroplastic (Precursor)
trEMBLtr|S4SKP2|S4SKP2_ACTCH1E-84Alpha-amylase {ECO:0000256|RuleBase:RU361134}
TAIR10AT1G69830.12E-55alpha-amylase-like 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene74708537473334-
GWHAAZE00000006mRNA74708537473334-
GWHAAZE00000006exon74708537471287-
GWHAAZE00000006exon74717087471982-
GWHAAZE00000006exon74730637473108-
GWHAAZE00000006exon74732667473334-
GWHAAZE00000006CDS74732667473334-
GWHAAZE00000006CDS74730637473108-
GWHAAZE00000006CDS74717087471982-
GWHAAZE00000006CDS74708537471287-
Transcript Sequence

Network for GWHGAAZE020518

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01176AMY, amyA, malS Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Starch and sucrose metabolismmap00500
Pancreatic secretionmap04972
Carbohydrate digestion and absorptionmap04973

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.272
SRR3591706second leaf0.498
SRR3591707mature leaf0.517
SRR3591708Shoot apex0.477
SRR3591709Stem0.168
SRR3591710White floral bud0.475
SRR3591711White flower1.757
SRR3591712Green floral bud0.449
SRR3591713Yellow flower2.059
SRP173429 SRR8316895Juvenile bud stage 0.105
SRR8316896Juvenile bud stage 0.277
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.050
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.111
SRR8316898Complete white stage 0.084
SRR8316899Complete white stage 0.418
SRR8316903Complete white stage 0.434
SRR8316902Silver flowering stage0.044
SRR8316904Silver flowering stage0.161
SRR8316905Silver flowering stage0.165
SRR8316906Gold flowering stage 0.704
SRR8316907Gold flowering stage 0.801
SRR8316908Gold flowering stage 0.736
SRP132670SRR6706286Control0.006
SRR6706287Light intensity 50%0.030
SRR6706288Light intensity 20%0.016
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.000
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.077
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.051
CNS0095597Whole white alabastrum(diploid) 40.121
CNS0095598Silvery flower (diploied) 10.045
CNS0095599Silvery flower (diploied) 20.051
CNS0095600Silvery flower (diploied) 30.131
CNS0095601Golden flower (diploid) 10.178
CNS0095602Golden flower (diploid) 20.834
CNS0095603Golden flower (diploid) 30.191
CNS0095604Slightly white alabastrum(tetraploid) 10.624
CNS0095605Slightly white alabastrum(tetraploid) 20.292
CNS0095606Slightly white alabastrum(tetraploid) 30.165
CNS0095607Whole white alabastrum(tetraploid) 10.613
CNS0095608Whole white alabastrum(tetraploid) 20.477
CNS0095609Whole white alabastrum(tetraploid) 30.488
CNS0095610Silvery flower (diploied) 10.300
CNS0095611Silvery flower (diploied) 20.282
CNS0095612Silvery flower (diploied) 30.082
CNS0095613Golden flower (tetraploid) 10.251
CNS0095614Golden flower (tetraploid) 20.492
CNS0095615Golden flower (tetraploid) 30.349
CRA001975CRR073297Stem 10.083
CRR073298Stem 20.156
CRR073299Stem 30.000
CRR073300Leaf 10.284
CRR073301Leaf 20.314
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.053
CRR073304Juvenile bud 20.090
CRR073305Juvenile bud 30.110
CRR073306Third green 10.115
CRR073307Third green 20.090
CRR073308Third green 30.097
CRR073309Second white 10.016
CRR073310Second white 20.214
CRR073311Second white 30.209
CRR073312Silver flowering 10.067
CRR073313Silver flowering 20.063
CRR073314Silver flowering 30.182
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.255
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.015
CRR073319Tawny withering 20.011
CRR073320Tawny withering 30.000