Gene detail

Detail information of GWHGAAZE020645

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002273935.1	6.23606E-96	PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 [Vitis vinifera]
COG	YP_001536464.1	3E-10	SRA-YDG domain-containing protein
Swissprot	tr\|Q9FF80\|SUVH1_ARATH	2E-80	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1
trEMBL	tr\|F6HIW8\|F6HIW8_VITVI	2E-96	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB52193.1}
TAIR10	AT5G04940.2	8E-70	SU(VAR)3-9 homolog 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	15696990	15698201	-
GWHAAZE00000006	mRNA	15696990	15698201	-
GWHAAZE00000006	exon	15696990	15697622	-
GWHAAZE00000006	exon	15697905	15698201	-
GWHAAZE00000006	CDS	15697905	15698201	-
GWHAAZE00000006	CDS	15696990	15697622	-

Transcript Sequence
>GWHTAAZE020669 ATGGCCAGGAGCAATTACATGATTGTCAAAGGTGGTACTAAAGACGAACCATTGGCGGTTAGCATCATTTCTTCAGGCAGGTACAATGATGAAGACAAGGATAAAGATGTCTTGATCTATAGTGGCCAAGGTGGCAATGTGAACAAGAAAGATAAAGAAGTGGCGGATCAAAAGCTTGAAAGGGGTAATCTTGCTTTGGAGAGAAGCTTGCATCAGTCTAATCCGATTAGAGTCATTTGTGGCGTGAAAGATGTGGTGAACCAGTTGACAAAAGTTTATGTCTATGATGGGCTTTATCCTAGTTTTGGGTGCAATTGCCATAATGCATGCCGGCCCGATGATCTTAACTGCTATTGTATACTCAAAAATGGAGGCGATTTCCCTTATACTGCAGACGGGGTACTAGTAGGCCGTAAACTGCTGGTGCACGAGTGTGGACCAACGTGCCCTTTCTTATCTAATTGCAAGAATAAAGTTTCACAGACGGATCTGAAGGTCCACATGGATTTGTTCAAAACGTCTAACTGCGGGTGGGGCCTGCGGTCATGGGACCCTATTCGAGCTGGTACTTTTATTTGTGAATATGCCAGTGAAGTTGTAGAAGGAAATGCACAGTGGGAATGGAGAAAATTATTCGGATTTCTTTTGAGTTTTGACACAGCCAATGCTTATGATAGTTCATTCAAATGGAATTATGATCCCGCATTACTTGATGAGGAGATTCCTGTTGATTCTAATGAAGATTACGATATCCCATTGCGATTAATCATTTCTGCAAAAACTATTGGGAATGTAGCTCCATTTGTGAACCATAGTTGCTCTCCGAATGTTTTTTGGCAGCCAGTTCTGTATGAGCATAACAGCGAATCTTTTCACCATATTGCATTTTTCCCTATCAAACATATCTCTCCTATGACAGAGTTGGCTTGA

Network for GWHGAAZE020645

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02182.18	SAD_SRA	11	99	2.10E-23
PF05033.17	Pre-SET	100	158	1.00E-07
PF00856.29	SET	177	308	4.10E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0034968	biological_process	histone lysine methylation
GO:0005634	cellular_component	nucleus
GO:0008270	molecular_function	zinc ion binding
GO:0018024	molecular_function	histone-lysine N-methyltransferase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.574
	SRR3591706	second leaf	4.105
	SRR3591707	mature leaf	5.910
	SRR3591708	Shoot apex	5.435
	SRR3591709	Stem	6.155
	SRR3591710	White floral bud	4.272
	SRR3591711	White flower	6.332
	SRR3591712	Green floral bud	4.291
	SRR3591713	Yellow flower	4.197
SRP173429	SRR8316895	Juvenile bud stage	4.140
	SRR8316896	Juvenile bud stage	6.290
	SRR8316897	Juvenile bud stage	1.186
	SRR8316894	Third green stage	1.813
	SRR8316900	Third green stage	5.527
	SRR8316901	Third green stage	4.513
	SRR8316898	Complete white stage	3.287
	SRR8316899	Complete white stage	6.234
	SRR8316903	Complete white stage	2.973
	SRR8316902	Silver flowering stage	2.615
	SRR8316904	Silver flowering stage	3.855
	SRR8316905	Silver flowering stage	1.642
	SRR8316906	Gold flowering stage	6.532
	SRR8316907	Gold flowering stage	4.421
	SRR8316908	Gold flowering stage	4.248
SRP132670	SRR6706286	Control	1.674
	SRR6706287	Light intensity 50%	1.906
	SRR6706288	Light intensity 20%	1.977
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.383
	CNS0095593	Slightly white alabastrum(diploid) 2	3.206
	CNS0095594	Slightly white alabastrum(diploid) 3	1.753
	CNS0095595	Whole white alabastrum(diploid) 2	3.818
	CNS0095596	Whole white alabastrum(diploid) 3	3.376
	CNS0095597	Whole white alabastrum(diploid) 4	3.009
	CNS0095598	Silvery flower (diploied) 1	5.448
	CNS0095599	Silvery flower (diploied) 2	3.580
	CNS0095600	Silvery flower (diploied) 3	5.794
	CNS0095601	Golden flower (diploid) 1	4.095
	CNS0095602	Golden flower (diploid) 2	3.933
	CNS0095603	Golden flower (diploid) 3	4.730
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.954
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.006
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.606
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.492
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.817
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.517
	CNS0095610	Silvery flower (diploied) 1	6.754
	CNS0095611	Silvery flower (diploied) 2	9.783
	CNS0095612	Silvery flower (diploied) 3	6.767
	CNS0095613	Golden flower (tetraploid) 1	5.740
	CNS0095614	Golden flower (tetraploid) 2	7.176
	CNS0095615	Golden flower (tetraploid) 3	4.077
CRA001975	CRR073297	Stem 1	2.327
	CRR073298	Stem 2	2.490
	CRR073299	Stem 3	2.230
	CRR073300	Leaf 1	2.371
	CRR073301	Leaf 2	3.169
	CRR073302	Leaf 3	1.729
	CRR073303	Juvenile bud 1	1.644
	CRR073304	Juvenile bud 2	1.119
	CRR073305	Juvenile bud 3	1.571
	CRR073306	Third green 1	1.213
	CRR073307	Third green 2	0.744
	CRR073308	Third green 3	0.545
	CRR073309	Second white 1	0.927
	CRR073310	Second white 2	2.228
	CRR073311	Second white 3	0.839
	CRR073312	Silver flowering 1	0.766
	CRR073313	Silver flowering 2	0.525
	CRR073314	Silver flowering 3	0.611
	CRR073315	Gold flowering 1	1.617
	CRR073316	Gold flowering 2	2.782
	CRR073317	Gold flowering 3	0.780
	CRR073318	Tawny withering 1	1.626
	CRR073319	Tawny withering 2	2.674
	CRR073320	Tawny withering 3	2.736