Gene detail

Detail information of GWHGAAZE020652

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AAN39918.1	3.60975E-07	glutathione S-transferase [Capsicum annuum]
trEMBL	tr\|Q8H1P7\|Q8H1P7_CAPAN	0.0000001	Glutathione S-transferase {ECO:0000313\|EMBL:AAN39918.1}
TAIR10	AT4G27220.1	0.0002	NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	15955710	15967297	-
GWHAAZE00000006	mRNA	15955710	15967297	-
GWHAAZE00000006	exon	15967169	15967297	-
GWHAAZE00000006	exon	15963075	15963419	-
GWHAAZE00000006	exon	15961566	15961668	-
GWHAAZE00000006	exon	15955710	15955945	-
GWHAAZE00000006	CDS	15967169	15967297	-
GWHAAZE00000006	CDS	15963075	15963419	-
GWHAAZE00000006	CDS	15961566	15961668	-
GWHAAZE00000006	CDS	15955710	15955945	-

Transcript Sequence
>GWHTAAZE020676 ATGCTAATTTTTGGATTTACAAAGATCAGCCTACATCGTCTTTGGGCTCGAGCGGCAATCGTACACCAACCAGTTGTTGGTACGATTATTGTGAACTCTAACGATCAAGCACTGAATCATCTCAAAAAGGATGAAGTGAAGGCTGCTGAAAGTAGAAGAAAAGGAAGGGGAATAACAGGGGATGGCTGTAGTGACGATTTTGAAGATCTTGATAATGATGAATTAGCTGAAGTATTTGGGAAGGATAAGAAGGGTGGAGTTTGGGCAGTGGGCTCAAATATCTCTAAGAAGCAATTACTTCATGTTGGGGTGGCAATGGCAAAGATTGATCAAGACAAGAAGACAATTGAAGAATCTGCCTCACTAAAAGATCAAATAATCTCTCATGTTGATTCGCGCTTAGACAATTTCGAATGTGTTATGCAAGCTATGTTTTTAAAATTGTCAAGTGGCAAGGAAAATGTCCCCCCAGTGGGGAGTATTGGTGGTGGTGGAGAGGAGACAAAGAAGCTGAAACTATATTCTAATTGGCGAAGCTCTTGTTCTTGGCGTGTCCATATTGCTCTTAAGTTGAAAGGGATTAAAGGATTCGGAATTGAAACGTTGCCCGACTGGTTCGAAAACATGTCTTGGCTCAACACAATAGTATTACGTGATTGCGTGCAGCTCGAGTATCTGTCGAACTTGGAAGGCCTCACCAAGTTAGAGAGGCTGTTAACCAATAACCGCCCACTTCTGAAGCAGAGAAGGCCTGGGTGGTCAGAGCTTCCCCCTCGAACGGACATTTTTGGTGATAGATCACGCCATAATTAG

Network for GWHGAAZE020652

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01800	maiA, GSTZ1	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Tyrosine metabolism	map00350
		Styrene degradation	map00643

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.490
	SRR3591706	second leaf	2.352
	SRR3591707	mature leaf	2.923
	SRR3591708	Shoot apex	4.270
	SRR3591709	Stem	4.595
	SRR3591710	White floral bud	1.536
	SRR3591711	White flower	3.622
	SRR3591712	Green floral bud	2.419
	SRR3591713	Yellow flower	2.287
SRP173429	SRR8316895	Juvenile bud stage	3.367
	SRR8316896	Juvenile bud stage	4.812
	SRR8316897	Juvenile bud stage	2.253
	SRR8316894	Third green stage	2.898
	SRR8316900	Third green stage	5.037
	SRR8316901	Third green stage	4.445
	SRR8316898	Complete white stage	0.448
	SRR8316899	Complete white stage	3.316
	SRR8316903	Complete white stage	2.539
	SRR8316902	Silver flowering stage	1.995
	SRR8316904	Silver flowering stage	3.176
	SRR8316905	Silver flowering stage	1.154
	SRR8316906	Gold flowering stage	5.273
	SRR8316907	Gold flowering stage	4.557
	SRR8316908	Gold flowering stage	3.669
SRP132670	SRR6706286	Control	2.440
	SRR6706287	Light intensity 50%	2.432
	SRR6706288	Light intensity 20%	2.428
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.364
	CNS0095593	Slightly white alabastrum(diploid) 2	9.389
	CNS0095594	Slightly white alabastrum(diploid) 3	6.966
	CNS0095595	Whole white alabastrum(diploid) 2	6.043
	CNS0095596	Whole white alabastrum(diploid) 3	4.709
	CNS0095597	Whole white alabastrum(diploid) 4	5.472
	CNS0095598	Silvery flower (diploied) 1	8.105
	CNS0095599	Silvery flower (diploied) 2	4.277
	CNS0095600	Silvery flower (diploied) 3	2.611
	CNS0095601	Golden flower (diploid) 1	6.072
	CNS0095602	Golden flower (diploid) 2	3.045
	CNS0095603	Golden flower (diploid) 3	3.047
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.645
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.358
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.876
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.569
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.152
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.074
	CNS0095610	Silvery flower (diploied) 1	12.231
	CNS0095611	Silvery flower (diploied) 2	4.496
	CNS0095612	Silvery flower (diploied) 3	4.865
	CNS0095613	Golden flower (tetraploid) 1	8.187
	CNS0095614	Golden flower (tetraploid) 2	7.843
	CNS0095615	Golden flower (tetraploid) 3	3.333
CRA001975	CRR073297	Stem 1	2.752
	CRR073298	Stem 2	2.518
	CRR073299	Stem 3	0.474
	CRR073300	Leaf 1	2.110
	CRR073301	Leaf 2	1.995
	CRR073302	Leaf 3	0.428
	CRR073303	Juvenile bud 1	0.507
	CRR073304	Juvenile bud 2	0.336
	CRR073305	Juvenile bud 3	0.341
	CRR073306	Third green 1	0.208
	CRR073307	Third green 2	0.046
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.177
	CRR073311	Second white 3	0.031
	CRR073312	Silver flowering 1	0.037
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.406
	CRR073316	Gold flowering 2	0.962
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.835
	CRR073319	Tawny withering 2	0.987
	CRR073320	Tawny withering 3	0.823