Detail information of GWHGAAZE020750


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010655703.10PREDICTED: pentatricopeptide repeat-containing protein At2g17525, mitochondrial [Vitis vinifera]
Swissprottr|Q84VG6|PP160_ARATH0Pentatricopeptide repeat-containing protein At2g17525, mitochondrial (Precursor)
trEMBLtr|B9S6W0|B9S6W0_RICCO0Pentatricopeptide repeat-containing protein, putative {ECO:0000313|EMBL:EEF40716.1}
TAIR10AT2G17525.13E-180Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene1994172019943207-
GWHAAZE00000006mRNA1994172019943207-
GWHAAZE00000006exon1994172019943207-
GWHAAZE00000006CDS1994172019943207-
Transcript Sequence

Network for GWHGAAZE020750

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0245map03022 Basal transcription factors
GO:0005685 U1 snRNP GOslim:cellular_component
GO:0005669 transcription factor TFIID complex GOslim:cellular_component
GO:0006376 mRNA splice site selection GOslim:biological_process
GO:0006352 DNA-templated transcription, initiation GOslim:biological_process
GO:0003676 nucleic acid binding GOslim:molecular_function
GO:0003729 mRNA binding GOslim:molecular_function
map03040 Spliceosome
map04657 IL-17 signaling pathway


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.21PPR821120.058
PF13041.7PPR_21141591.40E-13
PF12854.8PPR_12122443.20E-08
PF13041.7PPR_22502994.00E-15
PF01535.21PPR3273500.038
PF01535.21PPR3673880.076
PF01535.21PPR3944227.00E-07
PF13041.7PPR_24284733.30E-10
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.038
SRR3591706second leaf0.000
SRR3591707mature leaf0.037
SRR3591708Shoot apex0.118
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud0.145
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 4.660
SRR8316896Juvenile bud stage 7.344
SRR8316897Juvenile bud stage 1.636
SRR8316894Third green stage 4.182
SRR8316900Third green stage 5.557
SRR8316901Third green stage 7.536
SRR8316898Complete white stage 1.329
SRR8316899Complete white stage 7.029
SRR8316903Complete white stage 4.215
SRR8316902Silver flowering stage2.982
SRR8316904Silver flowering stage4.412
SRR8316905Silver flowering stage2.465
SRR8316906Gold flowering stage 6.242
SRR8316907Gold flowering stage 4.295
SRR8316908Gold flowering stage 3.647
SRP132670SRR6706286Control6.850
SRR6706287Light intensity 50%8.678
SRR6706288Light intensity 20%8.800
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.458
CNS0095593Slightly white alabastrum(diploid) 21.661
CNS0095594Slightly white alabastrum(diploid) 31.295
CNS0095595Whole white alabastrum(diploid) 21.132
CNS0095596Whole white alabastrum(diploid) 31.606
CNS0095597Whole white alabastrum(diploid) 41.344
CNS0095598Silvery flower (diploied) 13.329
CNS0095599Silvery flower (diploied) 22.085
CNS0095600Silvery flower (diploied) 34.923
CNS0095601Golden flower (diploid) 11.995
CNS0095602Golden flower (diploid) 22.574
CNS0095603Golden flower (diploid) 33.018
CNS0095604Slightly white alabastrum(tetraploid) 13.542
CNS0095605Slightly white alabastrum(tetraploid) 22.277
CNS0095606Slightly white alabastrum(tetraploid) 36.323
CNS0095607Whole white alabastrum(tetraploid) 11.464
CNS0095608Whole white alabastrum(tetraploid) 21.635
CNS0095609Whole white alabastrum(tetraploid) 34.414
CNS0095610Silvery flower (diploied) 15.363
CNS0095611Silvery flower (diploied) 25.039
CNS0095612Silvery flower (diploied) 33.192
CNS0095613Golden flower (tetraploid) 12.440
CNS0095614Golden flower (tetraploid) 23.876
CNS0095615Golden flower (tetraploid) 31.586
CRA001975CRR073297Stem 110.324
CRR073298Stem 28.849
CRR073299Stem 31.284
CRR073300Leaf 18.782
CRR073301Leaf 27.411
CRR073302Leaf 30.831
CRR073303Juvenile bud 10.666
CRR073304Juvenile bud 20.225
CRR073305Juvenile bud 31.230
CRR073306Third green 10.067
CRR073307Third green 20.120
CRR073308Third green 30.145
CRR073309Second white 10.000
CRR073310Second white 20.240
CRR073311Second white 30.131
CRR073312Silver flowering 10.048
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.007
CRR073315Gold flowering 10.587
CRR073316Gold flowering 20.711
CRR073317Gold flowering 30.022
CRR073318Tawny withering 11.473
CRR073319Tawny withering 20.846
CRR073320Tawny withering 30.546