Gene detail

Detail information of GWHGAAZE021536

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008241585.1	1.68388E-33	PREDICTED: putative B3 domain-containing protein Os03g0621600 [Prunus mume]
Swissprot	tr\|Q8RYD1\|REM16_ARATH	8E-27	B3 domain-containing protein REM16
trEMBL	tr\|A5B3C8\|A5B3C8_VITVI	6E-32	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN76392.1}
TAIR10	AT4G33280.1	4E-22	AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	56267633	56273807	+
GWHAAZE00000006	mRNA	56267633	56273807	+
GWHAAZE00000006	exon	56267633	56267711	+
GWHAAZE00000006	exon	56270456	56270613	+
GWHAAZE00000006	exon	56271818	56272208	+
GWHAAZE00000006	exon	56272554	56272723	+
GWHAAZE00000006	exon	56273571	56273807	+
GWHAAZE00000006	five_prime_UTR	56267633	56267711	+
GWHAAZE00000006	five_prime_UTR	56270456	56270493	+
GWHAAZE00000006	CDS	56270494	56270613	+
GWHAAZE00000006	CDS	56271818	56272208	+
GWHAAZE00000006	CDS	56272554	56272723	+
GWHAAZE00000006	CDS	56273571	56273807	+

Transcript Sequence
>GWHTAAZE021560 CACTCACACCTGAAGCACAAGGAAAGCCAGCGGCACTCACACACATTCCTCTCCCATCTTCTTTCTTTCCATACATCAGGTTTCCCTTGCCTTGATCTTTAGTGTCTACACGTCCAAATGAAAAGAAAGAGGGAAACAGAAACTGTAAATCGTCAAGGTCGTCCTAAAATCTGTTCATCTGATGAAATTCCCGAGTTCTTCCAAGTGTATCTCCCCAAATGGAACTCTCGCCGACTGAGCATACCATCGGAATTTATCAAGCATTTCAATGGAAACATACCGACAAAGGTGGTCCTTAAAGATCTTGGGGGAAACTTTTGGTTTGTAGACATGGAAGAAGATGAAAACGCTGTGCGTTTTGCCAATGGATGGCAAGACTTTGTGAAGGAAAATTCCTTACAGGAGGGGGAGTTCCTAGTTTTAAGATACAATGGAAGTTCAAGCTTTACTGTAAGAATATTCGGTAAGGACGTATGTATGAAGGATAATTATTTAGCTATGGAGAAGATTGCCACTGCAAACATAAAGTCTGAAGCTGCAAGTGAAACAGAGAGCGAGGCAGCAAGCACGGATACCCAAAATAGCCCCAAAATACCTGAAAAATCAAGAGGCTCATTTCAACTCTCAGGCCACAAGAAGAGCCGGAAGAGGCTGATGAATCAAAGGTTTTCACTTACAGCGGCTGATATAAAAATTGAAGATGGTGCTCTTAAAGCAGCATATGAATTAATCTCCAGCTCGAAGCATCCTACTTTCAAAGTTATTATGCCGCAAACTTATTTGGAAAGAAATTACATGGATATACCTCCAAGCTTTGTACAGAGGCATATGAAACAGGATACAAAGCGAGTGGAGCTTCTGATTAAGAACAAGTCATGGCCGGTGAACTTGACCTCTCCTCAAAGAAATAGGATATGTAAAGGTTGGCGCAAATGTCAGAGGGGGAATTCTTTTCAAGTCGGAGATGTTTGTGTATTTGAGTTGATTGATAGGGACAAACCTGTGCTCAAAGTTTCCATTTTCAAAAGTCAATGA

Network for GWHGAAZE021536

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	36	117	8.40E-17
PF02362.22	B3	213	304	9.40E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.035
	SRR3591706	second leaf	1.395
	SRR3591707	mature leaf	0.389
	SRR3591708	Shoot apex	4.662
	SRR3591709	Stem	1.613
	SRR3591710	White floral bud	1.664
	SRR3591711	White flower	1.643
	SRR3591712	Green floral bud	3.878
	SRR3591713	Yellow flower	0.661
SRP173429	SRR8316895	Juvenile bud stage	3.355
	SRR8316896	Juvenile bud stage	3.656
	SRR8316897	Juvenile bud stage	1.834
	SRR8316894	Third green stage	1.867
	SRR8316900	Third green stage	4.638
	SRR8316901	Third green stage	4.898
	SRR8316898	Complete white stage	0.249
	SRR8316899	Complete white stage	5.368
	SRR8316903	Complete white stage	0.394
	SRR8316902	Silver flowering stage	0.310
	SRR8316904	Silver flowering stage	0.584
	SRR8316905	Silver flowering stage	0.144
	SRR8316906	Gold flowering stage	0.713
	SRR8316907	Gold flowering stage	0.630
	SRR8316908	Gold flowering stage	0.966
SRP132670	SRR6706286	Control	2.142
	SRR6706287	Light intensity 50%	2.608
	SRR6706288	Light intensity 20%	2.946
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.034
	CNS0095593	Slightly white alabastrum(diploid) 2	7.142
	CNS0095594	Slightly white alabastrum(diploid) 3	2.998
	CNS0095595	Whole white alabastrum(diploid) 2	5.100
	CNS0095596	Whole white alabastrum(diploid) 3	2.608
	CNS0095597	Whole white alabastrum(diploid) 4	4.984
	CNS0095598	Silvery flower (diploied) 1	3.302
	CNS0095599	Silvery flower (diploied) 2	4.374
	CNS0095600	Silvery flower (diploied) 3	1.847
	CNS0095601	Golden flower (diploid) 1	2.176
	CNS0095602	Golden flower (diploid) 2	1.973
	CNS0095603	Golden flower (diploid) 3	1.414
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.898
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.897
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.619
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.816
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.713
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.358
	CNS0095610	Silvery flower (diploied) 1	0.685
	CNS0095611	Silvery flower (diploied) 2	0.832
	CNS0095612	Silvery flower (diploied) 3	4.836
	CNS0095613	Golden flower (tetraploid) 1	0.846
	CNS0095614	Golden flower (tetraploid) 2	0.836
	CNS0095615	Golden flower (tetraploid) 3	0.413
CRA001975	CRR073297	Stem 1	1.905
	CRR073298	Stem 2	3.029
	CRR073299	Stem 3	2.576
	CRR073300	Leaf 1	2.058
	CRR073301	Leaf 2	2.472
	CRR073302	Leaf 3	1.563
	CRR073303	Juvenile bud 1	1.510
	CRR073304	Juvenile bud 2	0.708
	CRR073305	Juvenile bud 3	1.905
	CRR073306	Third green 1	0.041
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.277
	CRR073310	Second white 2	0.036
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.125
	CRR073313	Silver flowering 2	0.046
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.359
	CRR073316	Gold flowering 2	1.035
	CRR073317	Gold flowering 3	1.967
	CRR073318	Tawny withering 1	1.529
	CRR073319	Tawny withering 2	1.176
	CRR073320	Tawny withering 3	3.026