Gene detail

Detail information of GWHGAAZE021547

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO98989.1	4.5256E-147	unnamed protein product [Coffea canephora]
COG	YP_001697388.1	2E-30	tRNA delta(2)-isopentenylpyrophosphate transferase
Swissprot	tr\|Q94ID2\|IPT5_ARATH	5E-122	Adenylate isopentenyltransferase 5, chloroplastic (Precursor)
trEMBL	tr\|A0A068TSP3\|A0A068TSP3_COFCA	2E-147	Coffea canephora DH200=94 genomic scaffold, scaffold_3 {ECO:0000313\|EMBL:CDO98989.1}
TAIR10	AT5G19040.1	1E-92	isopentenyltransferase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	56494435	56495304	-
GWHAAZE00000006	mRNA	56494435	56495304	-
GWHAAZE00000006	exon	56494435	56495304	-
GWHAAZE00000006	CDS	56494435	56495304	-

Transcript Sequence
>GWHTAAZE021571 ATGGGGGCCACCGGCACCGGAAAATCAAGACTCTCCATTGACCTAGCCACTAGGTTTCCCGCCGAGATTGTGAACTCCGACAAAATGCAAGTCTACAAAGGTCTTGATATTGTCACCAACAAAGTGACCGAAGAGGAGTGTCGCGGGGTGCCCCATCATTTACTAGGGTTTGTGGACCCCAATGTGGACTTTACGGCCACTGATTTTCAACACCACGCCTCGCAGGCTGTCGAATCCATAATCCGACGGGACAGGCTACCAATCATAGCTGGCGGATCAAATTCATACATCAAGGCTCTTGTCAACGATTCGGCTGGTTTTCAGTCGAAGTACGAGTGTTGCTTCCTCTGGGTTGATGTCTCATTGCCAGTTCTTCATTCTTTCGTATCTGAGCGAGTTGATCGGATGGTTAAAGAAGGGTTGATCGACGAATTGAGGAGATTTTTCGACCCTGAGGCCAATTACAAAAAAGGACTGAGACAGGCAATTGGTGTTCCGGAAATCGATCAATTCCTTAGAGCCGAGTTATCAAAAAAGGACGAGAAAACAAGGAGAGAACTTCTTGAAAGAGCCATTAGTGACATTAAGTCCAATACGTGTAACTTAGCTTGTTACCAATTGCAAAATATTCTAAGGCTTCAAAACCAACTAGGTTGGAACATGCACCACCTCGATGCCACGGAAGCATTCCTCAGACGAAGTTCTGGTGGGGCCCACGAGGCGTGGGACCGCCTCGTGGTAAGGCCAAGTACCATGATCGTCAATCAATTCTTGTACAAAGACGAATTTGCCCCTACCGGCATCACTGCCCCGATACTCGGTTCCGTTACCTCATCCGCCACCGCTTCCATTGCCGCCGTAACTCACTAA

Network for GWHGAAZE021547

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01715.18	IPPT	30	104	6.70E-25
PF01715.18	IPPT	109	208	1.50E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10760	IPT	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Zeatin biosynthesis	map00908

Gene Ontology

GO term	Ontology	Name
GO:0008033	biological_process	tRNA processing

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.836
	SRR3591706	second leaf	0.182
	SRR3591707	mature leaf	2.905
	SRR3591708	Shoot apex	0.015
	SRR3591709	Stem	11.730
	SRR3591710	White floral bud	0.357
	SRR3591711	White flower	0.899
	SRR3591712	Green floral bud	0.315
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.925
	SRR8316896	Juvenile bud stage	0.203
	SRR8316897	Juvenile bud stage	0.711
	SRR8316894	Third green stage	0.471
	SRR8316900	Third green stage	3.696
	SRR8316901	Third green stage	2.079
	SRR8316898	Complete white stage	0.746
	SRR8316899	Complete white stage	3.033
	SRR8316903	Complete white stage	0.141
	SRR8316902	Silver flowering stage	1.445
	SRR8316904	Silver flowering stage	0.852
	SRR8316905	Silver flowering stage	0.373
	SRR8316906	Gold flowering stage	1.675
	SRR8316907	Gold flowering stage	0.063
	SRR8316908	Gold flowering stage	0.825
SRP132670	SRR6706286	Control	0.821
	SRR6706287	Light intensity 50%	0.949
	SRR6706288	Light intensity 20%	1.084
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.712
	CNS0095593	Slightly white alabastrum(diploid) 2	4.130
	CNS0095594	Slightly white alabastrum(diploid) 3	1.291
	CNS0095595	Whole white alabastrum(diploid) 2	3.019
	CNS0095596	Whole white alabastrum(diploid) 3	1.523
	CNS0095597	Whole white alabastrum(diploid) 4	1.404
	CNS0095598	Silvery flower (diploied) 1	1.350
	CNS0095599	Silvery flower (diploied) 2	1.298
	CNS0095600	Silvery flower (diploied) 3	0.358
	CNS0095601	Golden flower (diploid) 1	0.172
	CNS0095602	Golden flower (diploid) 2	0.216
	CNS0095603	Golden flower (diploid) 3	0.290
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.402
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.626
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.540
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.588
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.694
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.895
	CNS0095610	Silvery flower (diploied) 1	0.540
	CNS0095611	Silvery flower (diploied) 2	0.594
	CNS0095612	Silvery flower (diploied) 3	2.128
	CNS0095613	Golden flower (tetraploid) 1	0.212
	CNS0095614	Golden flower (tetraploid) 2	0.182
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.947
	CRR073298	Stem 2	0.835
	CRR073299	Stem 3	1.918
	CRR073300	Leaf 1	5.344
	CRR073301	Leaf 2	5.860
	CRR073302	Leaf 3	5.582
	CRR073303	Juvenile bud 1	14.419
	CRR073304	Juvenile bud 2	4.307
	CRR073305	Juvenile bud 3	9.003
	CRR073306	Third green 1	1.990
	CRR073307	Third green 2	2.966
	CRR073308	Third green 3	1.819
	CRR073309	Second white 1	0.323
	CRR073310	Second white 2	0.079
	CRR073311	Second white 3	0.079
	CRR073312	Silver flowering 1	0.054
	CRR073313	Silver flowering 2	0.022
	CRR073314	Silver flowering 3	0.106
	CRR073315	Gold flowering 1	32.848
	CRR073316	Gold flowering 2	27.818
	CRR073317	Gold flowering 3	17.604
	CRR073318	Tawny withering 1	161.555
	CRR073319	Tawny withering 2	319.481
	CRR073320	Tawny withering 3	181.114