Gene detail

Detail information of GWHGAAZE021602

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009765257.1	5.494E-131	PREDICTED: probable serine/threonine-protein kinase NAK isoform X2 [Nicotiana sylvestris]
COG	YP_004179485.1	2E-17	serine/threonine protein kinase
Swissprot	tr\|O49839\|APK2A_ARATH	3E-108	Protein kinase 2A, chloroplastic (Precursor)
trEMBL	tr\|A0A068UGG6\|A0A068UGG6_COFCA	3E-131	Coffea canephora DH200=94 genomic scaffold, scaffold_26 {ECO:0000313\|EMBL:CDP07284.1}
TAIR10	AT1G76360.1	4E-90	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	57723780	57734879	+
GWHAAZE00000006	mRNA	57723780	57734879	+
GWHAAZE00000006	exon	57723780	57724230	+
GWHAAZE00000006	exon	57724480	57724899	+
GWHAAZE00000006	exon	57725786	57726117	+
GWHAAZE00000006	exon	57726624	57726653	+
GWHAAZE00000006	exon	57727653	57727791	+
GWHAAZE00000006	exon	57727889	57728025	+
GWHAAZE00000006	exon	57728104	57728227	+
GWHAAZE00000006	exon	57734389	57734879	+
GWHAAZE00000006	CDS	57723780	57724230	+
GWHAAZE00000006	CDS	57724480	57724899	+
GWHAAZE00000006	CDS	57725786	57726117	+
GWHAAZE00000006	CDS	57726624	57726653	+
GWHAAZE00000006	CDS	57727653	57727791	+
GWHAAZE00000006	CDS	57727889	57728025	+
GWHAAZE00000006	CDS	57728104	57728227	+
GWHAAZE00000006	CDS	57734389	57734879	+

Transcript Sequence
>GWHTAAZE021626 ATGTTCAGTCCCCCATCGGAGCAGTTATGCCGTCGCTTTTCACTCGATGAGATTAAATTGGCAACCAACAATTTCGACGATTCCATGGTTATAGGTAAGGGTGGATTCGGTACGGTTTACAAAGGGGATATCATTGATAATAATGGCGCATATACTACTGTTGCTTTCAAGCGTTTGAATCCTTTGTCTAAGCAAGGTGCTCCTGAGTTTTGGACCGAGATTACTATGCTATCAAATTTTCGGCATAGCCACCTCGTTTCTTTGATCGGCTATTGCGATCATGATAACGAGATGATTCTTGTTTACGAGTATATGGTCCGTGGAACCCTAGCTGACCATTTGTACAAAATTAGTAAAAATAACAATATTGGTAATAGTTTACCTTTATCCTGGGTACAAAGACTCAAAATATGTATAGGGGCTGCTCGCGGATTGGACTACCTCCATACTGTACTCTGCGAGAGGCCGGCTCTGGATCGAAGCCTTGATGAGGACCAATGGGGTCTTGCTAGATGGGGCCAGCAGTGCATCAAAGAAGGAGCTTCACATCAGATTATTGGGCCGAATTTGAAGTGGGAAATCTTGCCAAATTCTCTCACAGAATTTGTGCAAATTGCGGATCAATGCTTGCATAGTTGTCCAAAGAAACGTCCTACAATGTCTGAGGTGGTGACCAGACTTGAGCTTGCGTTGGCATCGCAACTACGAACCGATCTTGTGATCGAGGAGTATTTTTTTGATACTTGCTTGCCTGTTAGCGACCAAGAAAATGCGGATTCTTATCCGGAGGGCAACCATTTTGATAAAGTTGTACAGCTAGGGGATTCAAGCAGCGGACAGTTTTTCCAACTCGGAGCTCCGGTGATCTCAGTACATTGTGATGCAAAACCATCAAGTAACGCTAAAAGCCACAACAACAGCGGCCATAATAGCACATTGCCGAACAAAGACGGAGGCGTTGTCCAGGATGTGCCTACAAGTGGGCAAATTTTGAATCCAAATATGAAAATTTTCACATTCAATGAATTAAGAAGTGCAACTAGGAACTTCAAACTGGATGTGTTGGGCGAGGGAGGTTTTGGAATTGTTTTCAAAGGTTGGGTCGATGAGAAGACATATTCCCCATCACAGGTTGGAGTTGGGAAAGCCGTTGCCATTAAGAGGTTAAGGCGAGAGAGCATGCAAGGACTTGCTGAAGGGCTGGGTATTGATGAGAGAGGTTTAACCAACTTGATGGAAGTCGAAATTTTGGAAAAATTTAGTCACCCTAATATTGTGAAGCTCCTGGGGTACTACCTTGGGGAAGATGGGGAATTCCTCCTTGTTTATGAATACATGCTGAATCGAAGTTTAGATTGCCACCTTTTCAGAAAAAGTGCAGAATCACTTCCATGGGACACACGGCTTAATATAGCAGTTGGAGCAGCTCGAGGCCTTTCTTTCTTGCATGCAACAGAGAATCAAGTCATAGTCCGTGACGTTCAGACGAAAAATATATTGCTGGATGGGGATTTTAATGCAAAAGTTTCGGGTTTTGGATGTGCAAAGGGATTTCCTGAAAATGGGGAGTCCCACGTTTCAACAAGAGTTATCGGTACCTTTGGTTATTCAGCTCCGGAGTACATAGCCACTGGATGTTTGTATCTGAAAAGCGATGTCTACGGTTTTGGAGTGGTGTTGCTGGAATTACTAACAGGTTTGAGGGTGCTTGATATGAGTAGGGGCGCCCAAAAAAATAATTTGGTGGAATGGGCCAAGCCTTTGCTGCATCAAAGAAGAATGCTGACGAGAGTAGTGGATCCAAGGCTGGGAAATGATTACCCTCAACGAGAAGCCTTCAAATTGGCTAATCTTATACGACAATGTCTTCAAAATGACCCCAAATCCCGGCCTTCAATGAACGAAGTATTTCAGAGTTTAGAACAATTTGAATCCATCAAGAAGGGTAACTCGAAAGTGGAGGCAGCTCAGGCTAGGCATCCTGCGGCTCAAGGAGAGATGACACCCGACAGGAATACAGTTCAAAGAGAGGTGACACCCGACAGGAATACAGTTCAAAGAGAGGTGACACCCTACAAATTCCTGTGGTCATGGACTCGTTGTTTGTGGGGAAGCAATTCATAG

Network for GWHGAAZE021602

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	30	151	5.60E-19
PF07714.18	PK_Tyr_Ser-Thr	353	640	3.80E-38

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.129
	SRR3591706	second leaf	0.012
	SRR3591707	mature leaf	0.029
	SRR3591708	Shoot apex	0.049
	SRR3591709	Stem	0.052
	SRR3591710	White floral bud	4.479
	SRR3591711	White flower	3.520
	SRR3591712	Green floral bud	2.939
	SRR3591713	Yellow flower	3.981
SRP173429	SRR8316895	Juvenile bud stage	1.838
	SRR8316896	Juvenile bud stage	2.590
	SRR8316897	Juvenile bud stage	3.206
	SRR8316894	Third green stage	1.202
	SRR8316900	Third green stage	3.081
	SRR8316901	Third green stage	3.395
	SRR8316898	Complete white stage	1.276
	SRR8316899	Complete white stage	4.527
	SRR8316903	Complete white stage	3.185
	SRR8316902	Silver flowering stage	1.561
	SRR8316904	Silver flowering stage	2.158
	SRR8316905	Silver flowering stage	1.026
	SRR8316906	Gold flowering stage	4.462
	SRR8316907	Gold flowering stage	4.114
	SRR8316908	Gold flowering stage	5.641
SRP132670	SRR6706286	Control	3.471
	SRR6706287	Light intensity 50%	3.669
	SRR6706288	Light intensity 20%	3.622
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.385
	CNS0095593	Slightly white alabastrum(diploid) 2	1.380
	CNS0095594	Slightly white alabastrum(diploid) 3	1.711
	CNS0095595	Whole white alabastrum(diploid) 2	1.407
	CNS0095596	Whole white alabastrum(diploid) 3	1.793
	CNS0095597	Whole white alabastrum(diploid) 4	1.337
	CNS0095598	Silvery flower (diploied) 1	3.362
	CNS0095599	Silvery flower (diploied) 2	1.727
	CNS0095600	Silvery flower (diploied) 3	4.239
	CNS0095601	Golden flower (diploid) 1	1.598
	CNS0095602	Golden flower (diploid) 2	3.683
	CNS0095603	Golden flower (diploid) 3	3.099
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.023
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.064
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.004
	CNS0095610	Silvery flower (diploied) 1	0.035
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.007
	CNS0095614	Golden flower (tetraploid) 2	0.029
	CNS0095615	Golden flower (tetraploid) 3	0.050
CRA001975	CRR073297	Stem 1	3.644
	CRR073298	Stem 2	3.256
	CRR073299	Stem 3	2.594
	CRR073300	Leaf 1	3.213
	CRR073301	Leaf 2	3.850
	CRR073302	Leaf 3	2.708
	CRR073303	Juvenile bud 1	2.621
	CRR073304	Juvenile bud 2	1.668
	CRR073305	Juvenile bud 3	2.236
	CRR073306	Third green 1	1.192
	CRR073307	Third green 2	0.897
	CRR073308	Third green 3	1.676
	CRR073309	Second white 1	1.658
	CRR073310	Second white 2	1.363
	CRR073311	Second white 3	2.340
	CRR073312	Silver flowering 1	0.859
	CRR073313	Silver flowering 2	1.116
	CRR073314	Silver flowering 3	0.854
	CRR073315	Gold flowering 1	1.702
	CRR073316	Gold flowering 2	2.198
	CRR073317	Gold flowering 3	0.722
	CRR073318	Tawny withering 1	2.464
	CRR073319	Tawny withering 2	2.200
	CRR073320	Tawny withering 3	2.155