Detail information of GWHGAAZE021613


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006354974.11.0847E-131PREDICTED: receptor-like protein kinase FERONIA-like [Solanum tuberosum]
COGYP_001958461.16E-21hypothetical protein Aasi_1443
Swissprottr|Q3E8W4|ANX2_ARATH3E-98Receptor-like protein kinase ANXUR2 (Precursor)
trEMBLtr|M1APN7|M1APN7_SOLTU4E-132Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400027429}
TAIR10AT5G28680.13E-86Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene5793937857944494-
GWHAAZE00000006mRNA5793937857944494-
GWHAAZE00000006exon5794335757944494-
GWHAAZE00000006exon5794031657940657-
GWHAAZE00000006exon5793937857939406-
GWHAAZE00000006CDS5794335757944494-
GWHAAZE00000006CDS5794031657940657-
GWHAAZE00000006CDS5793937857939406-
Transcript Sequence

Network for GWHGAAZE021613

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0285GO:0030244 cellulose biosynthetic process GOslim:biological_process
Protein Kinases RLK-Pelle_CrRLK1L-1 family Protein Kinases RLK-Pelle_CrRLK1L-1
GO:0016760 cellulose synthase (UDP-forming) activity GOslim:molecular_function
GO:0016757 transferase activity, transferring glycosyl groups GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07714.18PK_Tyr_Ser-Thr313165.60E-46
PF07714.18PK_Tyr_Ser-Thr4094988.00E-16
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_CrRLK1L-1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0005524molecular_functionATP binding
GO:0004672molecular_functionprotein kinase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.660
SRR3591706second leaf1.163
SRR3591707mature leaf1.723
SRR3591708Shoot apex3.807
SRR3591709Stem10.485
SRR3591710White floral bud1.533
SRR3591711White flower2.084
SRR3591712Green floral bud1.380
SRR3591713Yellow flower1.565
SRP173429 SRR8316895Juvenile bud stage 34.185
SRR8316896Juvenile bud stage 35.714
SRR8316897Juvenile bud stage 2.992
SRR8316894Third green stage 3.468
SRR8316900Third green stage 7.594
SRR8316901Third green stage 18.383
SRR8316898Complete white stage 1.245
SRR8316899Complete white stage 24.179
SRR8316903Complete white stage 1.218
SRR8316902Silver flowering stage3.893
SRR8316904Silver flowering stage1.786
SRR8316905Silver flowering stage1.392
SRR8316906Gold flowering stage 4.339
SRR8316907Gold flowering stage 3.876
SRR8316908Gold flowering stage 1.654
SRP132670SRR6706286Control5.172
SRR6706287Light intensity 50%6.016
SRR6706288Light intensity 20%5.388
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.882
CNS0095593Slightly white alabastrum(diploid) 211.483
CNS0095594Slightly white alabastrum(diploid) 311.591
CNS0095595Whole white alabastrum(diploid) 29.355
CNS0095596Whole white alabastrum(diploid) 32.374
CNS0095597Whole white alabastrum(diploid) 47.425
CNS0095598Silvery flower (diploied) 121.278
CNS0095599Silvery flower (diploied) 225.193
CNS0095600Silvery flower (diploied) 317.126
CNS0095601Golden flower (diploid) 127.651
CNS0095602Golden flower (diploid) 229.539
CNS0095603Golden flower (diploid) 331.448
CNS0095604Slightly white alabastrum(tetraploid) 10.456
CNS0095605Slightly white alabastrum(tetraploid) 20.516
CNS0095606Slightly white alabastrum(tetraploid) 30.858
CNS0095607Whole white alabastrum(tetraploid) 10.560
CNS0095608Whole white alabastrum(tetraploid) 20.214
CNS0095609Whole white alabastrum(tetraploid) 30.646
CNS0095610Silvery flower (diploied) 10.896
CNS0095611Silvery flower (diploied) 20.970
CNS0095612Silvery flower (diploied) 31.945
CNS0095613Golden flower (tetraploid) 10.382
CNS0095614Golden flower (tetraploid) 21.316
CNS0095615Golden flower (tetraploid) 30.413
CRA001975CRR073297Stem 111.148
CRR073298Stem 211.224
CRR073299Stem 38.442
CRR073300Leaf 113.557
CRR073301Leaf 220.127
CRR073302Leaf 37.167
CRR073303Juvenile bud 17.421
CRR073304Juvenile bud 29.665
CRR073305Juvenile bud 314.432
CRR073306Third green 13.933
CRR073307Third green 23.137
CRR073308Third green 34.114
CRR073309Second white 13.128
CRR073310Second white 26.352
CRR073311Second white 37.633
CRR073312Silver flowering 120.533
CRR073313Silver flowering 214.901
CRR073314Silver flowering 313.911
CRR073315Gold flowering 18.673
CRR073316Gold flowering 217.570
CRR073317Gold flowering 36.955
CRR073318Tawny withering 114.744
CRR073319Tawny withering 220.741
CRR073320Tawny withering 318.891