Gene detail

Detail information of GWHGAAZE021643

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004136137.1	2.19491E-91	PREDICTED: LOW QUALITY PROTEIN: probable receptor-like protein kinase At2g47060-like [Cucumis sativus]
COG	YP_002508747.1	7E-11	protein kinase
Swissprot	tr\|Q41328\|PTI1_SOLLC	6E-86	Pto-interacting protein 1
trEMBL	tr\|K3XJ88\|K3XJ88_SETIT	5E-90	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si001961m}
TAIR10	AT3G17410.1	1E-70	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	58759866	58761560	+
GWHAAZE00000006	mRNA	58759866	58761560	+
GWHAAZE00000006	exon	58759866	58760197	+
GWHAAZE00000006	exon	58760812	58761007	+
GWHAAZE00000006	exon	58761165	58761251	+
GWHAAZE00000006	exon	58761432	58761560	+
GWHAAZE00000006	CDS	58759866	58760197	+
GWHAAZE00000006	CDS	58760812	58761007	+
GWHAAZE00000006	CDS	58761165	58761251	+
GWHAAZE00000006	CDS	58761432	58761560	+

Transcript Sequence
>GWHTAAZE021667 ATGCTAGTAGATATAACCCATATCCTTGGTGGTACTGATAATATTCATCAATTTGTGGATGTAGGACAAAAAGATGTGAAAGATGCGCAGCCCGGTTCAGTTCTATCATGGTCCCAGCGAGTTAAAATTGCTGTTGGAGTAGCAAAAGGACTTGAATACTTGCATGAAAAGTCAGATCCCCATGTTGTCCATTGCAATATCAGGTCCTCCAATGTTTTACTTTTTGAGGACGATGTTGCAAAGATAGCAGATATGGACTTGTCAAAGCAGGCCCTTAACAGGCATCTTTATTCCAGTAAGACCGATATAACCTCTGGTTACTGTGCTCCAGAGATTGACCCGAGGATTGACGTTATGGACTTTGGCATCCCCTTTGAGCAGTTGCGTTGTAGTTGGCATGCAGTGACTGGAGAAATGAGTTCAACGAGTGACATTTACAGCTTTGGCGTGGTCCTCTTGGAACTATTGACTGGCCATAAACCAATTGATCATACATTGCCACGTGGACAACAGAATCTGGTCTTATGGGCGACTCCAAAACTCAGCAAAGATAAAGTGAAGCAGTGTATTGACCCTAAATTGAATGGAGAATTCCATCCCAGACAAGCTGCAAAGATGGCTGAAGTTGCAGCCTTGTGTTTGCAATATGAAGCTGATTTTCGTCCGACCATGAGCATTGTAGTTAAAGCCCTCCAGCCTCTGCTAACTGCTTTACCTGGACCTGGATGGGACACCACACTTTGA

Network for GWHGAAZE021643

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	33	231	1.50E-21

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIII

KEGG pathway

KO	Enzyme	pathway	mapID
K13436	PTI1	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.488
	SRR3591706	second leaf	1.472
	SRR3591707	mature leaf	0.269
	SRR3591708	Shoot apex	2.063
	SRR3591709	Stem	1.025
	SRR3591710	White floral bud	0.138
	SRR3591711	White flower	1.122
	SRR3591712	Green floral bud	0.476
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.139
	SRR8316896	Juvenile bud stage	1.358
	SRR8316897	Juvenile bud stage	0.568
	SRR8316894	Third green stage	0.117
	SRR8316900	Third green stage	0.626
	SRR8316901	Third green stage	0.718
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	2.461
	SRR8316903	Complete white stage	0.126
	SRR8316902	Silver flowering stage	0.052
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.101
	SRR8316907	Gold flowering stage	0.276
	SRR8316908	Gold flowering stage	0.136
SRP132670	SRR6706286	Control	1.295
	SRR6706287	Light intensity 50%	1.074
	SRR6706288	Light intensity 20%	1.175
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.231
	CNS0095593	Slightly white alabastrum(diploid) 2	1.462
	CNS0095594	Slightly white alabastrum(diploid) 3	2.087
	CNS0095595	Whole white alabastrum(diploid) 2	0.969
	CNS0095596	Whole white alabastrum(diploid) 3	0.630
	CNS0095597	Whole white alabastrum(diploid) 4	0.852
	CNS0095598	Silvery flower (diploied) 1	0.923
	CNS0095599	Silvery flower (diploied) 2	0.415
	CNS0095600	Silvery flower (diploied) 3	0.030
	CNS0095601	Golden flower (diploid) 1	1.879
	CNS0095602	Golden flower (diploid) 2	0.498
	CNS0095603	Golden flower (diploid) 3	0.423
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.229
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.238
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.200
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.590
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.900
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.569
	CNS0095610	Silvery flower (diploied) 1	0.491
	CNS0095611	Silvery flower (diploied) 2	0.786
	CNS0095612	Silvery flower (diploied) 3	0.508
	CNS0095613	Golden flower (tetraploid) 1	0.484
	CNS0095614	Golden flower (tetraploid) 2	0.972
	CNS0095615	Golden flower (tetraploid) 3	0.219
CRA001975	CRR073297	Stem 1	1.969
	CRR073298	Stem 2	2.020
	CRR073299	Stem 3	0.485
	CRR073300	Leaf 1	1.032
	CRR073301	Leaf 2	0.705
	CRR073302	Leaf 3	0.260
	CRR073303	Juvenile bud 1	0.249
	CRR073304	Juvenile bud 2	0.357
	CRR073305	Juvenile bud 3	0.477
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.088
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.015
	CRR073316	Gold flowering 2	0.230
	CRR073317	Gold flowering 3	0.076
	CRR073318	Tawny withering 1	0.757
	CRR073319	Tawny withering 2	1.648
	CRR073320	Tawny withering 3	0.805