Gene detail

Detail information of GWHGAAZE021645

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02334.1	8.9561E-126	unnamed protein product [Coffea canephora]
COG	YP_005517714.1	2E-22	serine/threonine protein kinase with PASTA sensor(s)
Swissprot	tr\|Q41328\|PTI1_SOLLC	2E-116	Pto-interacting protein 1
trEMBL	tr\|A0A068U2D1\|A0A068U2D1_COFCA	3E-126	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02334.1}
TAIR10	AT3G17410.1	4E-91	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	58790884	58795562	-
GWHAAZE00000006	mRNA	58790884	58795562	-
GWHAAZE00000006	exon	58790884	58791024	-
GWHAAZE00000006	exon	58791177	58791263	-
GWHAAZE00000006	exon	58791384	58791522	-
GWHAAZE00000006	exon	58792250	58792532	-
GWHAAZE00000006	exon	58793389	58793515	-
GWHAAZE00000006	exon	58793645	58793919	-
GWHAAZE00000006	exon	58794485	58795562	-
GWHAAZE00000006	CDS	58794485	58795562	-
GWHAAZE00000006	CDS	58793645	58793919	-
GWHAAZE00000006	CDS	58793389	58793515	-
GWHAAZE00000006	CDS	58792250	58792532	-
GWHAAZE00000006	CDS	58791384	58791522	-
GWHAAZE00000006	CDS	58791177	58791263	-
GWHAAZE00000006	CDS	58790884	58791024	-

Transcript Sequence
>GWHTAAZE021669 ATGGCGTCACTTCATGAATCAAACGCTGGTGAGAAATTCAATCTATCGGAAGAGCCATGCCCTCGATTTTCACTTGTTGATATCGAAAAGGCCACAAATAATTTCACTTCTTTGGTCATAGGCGAGGGGGGGTTCGCCAAGGTTTACAAAGGAGAAATTGAAATTGATAATGGGGAGGCTAATAGTACTACTGTTGCCATTAAGCGAATGCATTCTATGTCCCCTGAATCTAGGAAAGAGTTTCAGCAAGAGATTTCAATGGTGTACAAATTTCGACATAGTCACCTCGTCTCCCTCATTGGTTACTGTGAGACCGACGAGGAAATGATACTGGTTTATGAATATATGGGCGGTGGAACTCTCAAAGATGCTTTGTGTAAAGGTGGTATAAATGGCAACAATAACATTATTCTAAGTTGGGTCGAACGCCTTAAGATAAGTGTTGGTGCTGCTCGGGGTTTACACTACCTTCATACTGGTACCGGGAACAAGCACAAAGTCATTCATCGCGATGTCAAGAGTTCAAATATATTGTTGGATGAGAATCGAAAAATAGCTAAAATTTCAGATTTTGGGCTGTCTAAAATAGGTCCAACAAACCAGACAGTCACCGGGGTGTCCACCAAAGTTGCAGGCACGCGTGGTTATTGGGATCCAGATTATTGTGTCACCGGTATCCTCACTAGTAAATCTGATGTTTACTCCTTTGCAGTTGTCCTGTTTGAATTGCTGTCTGGGCGGCCTGCTTTGGATTTGACACTTGCTGATGAGGACCAGTGGAACTTAGCTATGTGGGCCCAGCAATGTGTTAAAAAAGGAAAAGTTAAACAAATTGTTGATCCCAATTTGAAGTCACAAATCTTACCTAGTAGTTTGTCGGCATTTGTGAAAATTGCGGACCGATGCTTGCATGCTCGTCCAACAGAACGCCCTACAATGACTGAGGTGCTGGCTGAGCTTGAGCATGCTTTGAAATTACAAGAAAGTGGAAAAGTTGCCACAGGATACGGTGTTTGGAGAAGGGAATACGCTGAGAAGTTGCAGCTGTTGTTTTCTGTCACACATCGACCAATATCGGCTAATAGTGCAGTTTCTAATGCCACAGAAGCTGCACCAACTGATACAGAGGCTGCACCAAATGACAACCAGGGTATAAACATTAAGCCCGTTGCCAGCATCCCTTCTCTTCAGCTATATGAGTTGAAGGAAATAACAGACAACTTTAGTACAAAAGCTTTGATTTGCAACGGAACTTGTGGAAAATTATACTATGGTATCTTGAAAAGTGGGCAGGCTTCATGCATCAAAATGTTAGAGCTCAATAAGCTTCCACTCCAAGACTTTTTATCATGGGTTCACACGGTATCAAGGCTTAAACATGAAAATGTGGTTGAGCTACTTGGTTATTGCACTGATGTTGATCTCCGTTTCCTTGCATATGAGTATGCTCCGAATGGATCTCTTCATGACATTCTTCACCGACAAAAAGGTATCGAAAGGCTGCAGCCGGGTCCAGTTCTAACATGGTCCCAAAGAGTTAAAATTGCTGTTGGAGCTGCCAAAGGACTTCAATACTTCCATGAAAAGCCACAACCAAATATCATCCATGGCGGTATCAAGTCCAGTAATGTTTTACTTTTTAATGATGGCATCTCGAAGATAGCGAATATTAAATTTTCAAATCAAGCCCTGGATGTGGAACCGACTTTACCTTATGATTATACCACTTGGTTTGTCCGACCGAATTGTTTTGCTGCTCCGAAGCAACTGAGTTCAGAGAGTGAAGAATTGAGATCAAGGAGTGACGTTTTCATGTTCGGCGTGGTCCTCTTGGAACTGTTGACTGGGCGTAAAGCTGTTGATTATACACTACCACGTTCACAACAGAATCTGATCAAATGGGTAATTCCAAAACTCAACTATAATAGAGTTAACGAGTGCATTGACCCTAGATTGAACGGAGAATACCCTCTCTGGCAAGCTGCAGAGATGGCCGCCATTGCAGCCACGTGTGTGCAGTATGAACCTGTACTGCGTCCGTTCATGAGCGTTGTAGTGAATCGCCTCCAACGCCTGCTGAATGATTTACCCGAACCTTGCAGTGAAGCAACACTTTATGAACACCGTTGA

Network for GWHGAAZE021645

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	39	320	1.20E-45
PF07714.18	PK_Tyr_Ser-Thr	412	689	3.80E-28

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIII

KEGG pathway

KO	Enzyme	pathway	mapID
K13436	PTI1	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.071
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.196
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.038
	SRR8316896	Juvenile bud stage	0.033
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.010
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.008
	SRR6706287	Light intensity 50%	0.042
	SRR6706288	Light intensity 20%	0.008
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.044
	CNS0095594	Slightly white alabastrum(diploid) 3	0.037
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.022
	CNS0095603	Golden flower (diploid) 3	0.002
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.141
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.026
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.045
	CNS0095610	Silvery flower (diploied) 1	0.024
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.016
CRA001975	CRR073297	Stem 1	0.066
	CRR073298	Stem 2	0.002
	CRR073299	Stem 3	0.065
	CRR073300	Leaf 1	0.009
	CRR073301	Leaf 2	0.052
	CRR073302	Leaf 3	0.142
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.005
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.065
	CRR073317	Gold flowering 3	0.007
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000