Gene detail

Detail information of GWHGAAZE021668

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010555147.1	2.4734E-119	PREDICTED: LOW QUALITY PROTEIN: pto-interacting protein 1 [Tarenaya hassleriana]
COG	YP_004696643.1	5E-25	serine/threonine protein kinase
Swissprot	tr\|Q41328\|PTI1_SOLLC	2E-136	Pto-interacting protein 1
trEMBL	tr\|A0A068U2D1\|A0A068U2D1_COFCA	2E-119	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02334.1}
TAIR10	AT3G17410.1	2E-109	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	59255333	59263103	-
GWHAAZE00000006	mRNA	59255333	59263103	-
GWHAAZE00000006	exon	59262050	59263103	-
GWHAAZE00000006	exon	59260001	59260107	-
GWHAAZE00000006	exon	59259727	59259784	-
GWHAAZE00000006	exon	59258391	59258746	-
GWHAAZE00000006	exon	59258175	59258301	-
GWHAAZE00000006	exon	59256859	59257120	-
GWHAAZE00000006	exon	59256165	59256390	-
GWHAAZE00000006	exon	59255959	59256045	-
GWHAAZE00000006	exon	59255333	59255778	-
GWHAAZE00000006	CDS	59262050	59263103	-
GWHAAZE00000006	CDS	59260001	59260107	-
GWHAAZE00000006	CDS	59259727	59259784	-
GWHAAZE00000006	CDS	59258391	59258746	-
GWHAAZE00000006	CDS	59258175	59258301	-
GWHAAZE00000006	CDS	59256859	59257120	-
GWHAAZE00000006	CDS	59256165	59256390	-
GWHAAZE00000006	CDS	59255959	59256045	-
GWHAAZE00000006	CDS	59255647	59255778	-
GWHAAZE00000006	three_prime_UTR	59255333	59255646	-

Transcript Sequence
>GWHTAAZE021692 ATGCAGCCGGTTCAAGAATCAAATCCCGGTAAGAAATTTAATCCATCCTCTTCGTTGCCGCCAGAAAATCTATCCCGTCAGTTTTCGCTTGATGAGATCTTAGCGGCCACAAATGATTTTGACGATTCATTGGTCATTGGCCAAGGGGGGTTTGCAAAGGTTTACAAAGGGGAAATTGATAATGGGACTCATACTGTTGCCATAAAGAGAATGAAGCCCATGTTCAAAGAAGGCGCCCCTGAGTTTCATTCAGAGATTTTGATGGTGTCCAAATTTCGTCACAGTCATCTCGTCTCTCTCATTGGTTACTGTGAGAGCGAAAACGAAATGATCCTTGTATATGAATATATGGCCCGTGGAACTCTAGAAGATAATTTGCATAAAATTGGTACAAGTGGAAATAACAATCTTCCTCTATCTTGGGTCCAACGCCTTAAAATATGTATTGGTGCTGCTCGGGGGTTAGAGTACCTTCATACTGGTACTGGTATCCAGCACAGAGTCATTCATCGCGATGTTAAAAGTTCAAATATATTGTTGGATGAGAACTGGGCAGCTAAAATCTCGGATTTTGGATTGTCAAAAATCGGTCCAGCAAACCAGTCAGACACCCATGTTAGCACCCGAATTGTAGGCACGTTTGGTTATTTGGATCCAGATTACGCTTTCACTGGTAGCCTCACTAGGAAATCCGATGTGTACTCCTTTGGGGTTGTACTATTTGAAGTGTTGTGTGGGAGGCCGGCCTTGGATCGAAGGCTCCATGAGGACCAACGGGGCTTAGCTGGGTGGGCGCAGTACTGCATCAAAAAAGGAATAGTTAAGCAAATTATTGATCCCAATTTGAAGTCGCAAATTGTACCACGTAGTTTGTTGGCATTTGTGAAAGTTGCTGACCGATGCTTGCATGGTCGTCCAAAAGAACGCCCTACAATGAATGAGGTGCTGACTGATCTTGAGCTTGCTTTGAATTTGCAAGAGAGCACAAATGTTGCCAGTGGGTTCGCAGAAAAGTTCCGGTGGTTGTTTTCAGTAACACCTCGGCCAATATCAGGTAAATTAGCCCCAACTCCCTCTCTGTACAATCCTCCTCCTCCTGTTGTTGTTGATGATTATCATAACCATCACCTTCTTAATTCGCTTCCAACAGCACGAAAATGGGTCATCGGCTGGGGCGGCTTTGGGAAGGTTTACAAAGGGTCATTTGATAATGGGGATAGTAATAATGCGGTTTATCATGCCACAGAGGTTGCACCAACTGATGCATTGACTGCACCAATTGATACAGAGGATGTGTCAAAAAGCACGGTGACTGCATTAATTGATACTGAGGCTGCACCAAAAACCACAGTGGCTGCACTGAATGACACGAAGGCTACAAACATTGAGCCTATTGTCATCCCTTCTGTTCGGCTGGATGAGTTGAGGAAAATAACAGACAACTTTGGTACAAAGTGTTTGATCTATGAGGGGACTTATGGAAGATTATACAATGGTATTTTGAAAAGTGGGCGGGCCTCATGCATCAAAAAGTTAGATCCGAATGAACTTTCAGAGCAAGATTTTTTAGCTCAGGTTTCGATGGCATCAAGACTTAAACATGAAAACGTGGTTGAGCTACTTGGTTATTCTGTGGATGGTGACCTACGTGTCCTTGCCTATGAGTATGCTTCAAATGGATCTCTTTATGACATTCTTCACGGACGGAAAGGTGGGAAAGACAAGCAACCAGGTCCAGTTCTGTCATGGTTGCAGAGAGTTAAAATTGCTGTTGGAGCAGCAAAAGGACTTGAATACTTGCATGAAAAGTCAGATCCCCATATTGTCCATTGCTATGTTAGGTCCTCCAATGTTTTACTTTTTAAGGATGATGTTGCAAAGATAGCGGATATGGACTTGTCGAACCAAGCCCCTAACATGACAAGGCATCTTTCTTCCACTTATGCTGGTTATTTTCCTCCTGAGTGGCCTCAACCGCCGTCTAAGTTTGATTTTGATGTTAGAGACTTCGGAATCCCTGTTGGCCCTCTGCCGTCGAGAGCTAGATGGCATACAATTACTGAAAATACTGAAAAAGTGTGTTCACAGAGTGACGTTTACAGCTTTGGCGTGGTTCTTTTGGAACTATTGACAGGCCGTATTCCTTTTGATCGGACATTACCACATGGACAACAGAGTCTGGTTACATGGGCAACTCCAAAACTCAGCGATGATAACGTGAAGCAGTGTATTGACCCTAAATTGAATGGAGAATTCCATCCCAAACAAGCTGCAAAGATGGCTGCTGTTGCAGCTTTGTGTACACAATATGAAGCCGAATACCGGCCGACCATGGGGATTGTAGTTAAAGCACTCCAGCCTTTGCTGAATGCTTTACCTGGACCCAGACGTGAGGCACCACACTCGTAAATCACGTGCCTTCATTATGATTTAATGTGATACCCACTCTTCAGTCATCCAAAAGTTGGTGCATTTTTCTTTCTTCTTTTTTGACAATGAGTAGAATCATTCTGAAGATCAAGTGACGCCGGCTACATTGCTGTCCTATGCATTTAGTTTGTATTAAAGTTCTGATCTGTGTACCAGCTGGTACCAGTTCATTGTATTCTTCAGTATATATGCTTGTATCGATTCTTGTATTGGGTGCCCATAACATAGCTTAACATGTAGAGACAAGCTGTGAGATTGCAATATTTAAAATGCTATACTTAAAATTCATACAA

Network for GWHGAAZE021668

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	45	319	3.70E-45
PF07714.18	PK_Tyr_Ser-Thr	488	784	1.70E-29

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.576
	SRR3591706	second leaf	7.103
	SRR3591707	mature leaf	12.371
	SRR3591708	Shoot apex	8.663
	SRR3591709	Stem	9.127
	SRR3591710	White floral bud	7.462
	SRR3591711	White flower	8.144
	SRR3591712	Green floral bud	5.558
	SRR3591713	Yellow flower	7.753
SRP173429	SRR8316895	Juvenile bud stage	3.995
	SRR8316896	Juvenile bud stage	5.687
	SRR8316897	Juvenile bud stage	2.367
	SRR8316894	Third green stage	2.807
	SRR8316900	Third green stage	6.132
	SRR8316901	Third green stage	7.026
	SRR8316898	Complete white stage	2.712
	SRR8316899	Complete white stage	8.073
	SRR8316903	Complete white stage	4.617
	SRR8316902	Silver flowering stage	3.920
	SRR8316904	Silver flowering stage	5.718
	SRR8316905	Silver flowering stage	2.156
	SRR8316906	Gold flowering stage	8.535
	SRR8316907	Gold flowering stage	7.228
	SRR8316908	Gold flowering stage	8.210
SRP132670	SRR6706286	Control	6.669
	SRR6706287	Light intensity 50%	6.497
	SRR6706288	Light intensity 20%	6.402
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.449
	CNS0095593	Slightly white alabastrum(diploid) 2	3.164
	CNS0095594	Slightly white alabastrum(diploid) 3	3.827
	CNS0095595	Whole white alabastrum(diploid) 2	3.278
	CNS0095596	Whole white alabastrum(diploid) 3	2.884
	CNS0095597	Whole white alabastrum(diploid) 4	2.970
	CNS0095598	Silvery flower (diploied) 1	6.969
	CNS0095599	Silvery flower (diploied) 2	6.127
	CNS0095600	Silvery flower (diploied) 3	7.189
	CNS0095601	Golden flower (diploid) 1	4.756
	CNS0095602	Golden flower (diploid) 2	7.376
	CNS0095603	Golden flower (diploid) 3	6.440
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.695
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.780
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.604
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.716
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.479
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.783
	CNS0095610	Silvery flower (diploied) 1	9.566
	CNS0095611	Silvery flower (diploied) 2	10.115
	CNS0095612	Silvery flower (diploied) 3	8.235
	CNS0095613	Golden flower (tetraploid) 1	6.134
	CNS0095614	Golden flower (tetraploid) 2	9.639
	CNS0095615	Golden flower (tetraploid) 3	8.153
CRA001975	CRR073297	Stem 1	8.012
	CRR073298	Stem 2	7.323
	CRR073299	Stem 3	4.950
	CRR073300	Leaf 1	7.948
	CRR073301	Leaf 2	7.664
	CRR073302	Leaf 3	4.496
	CRR073303	Juvenile bud 1	3.949
	CRR073304	Juvenile bud 2	2.235
	CRR073305	Juvenile bud 3	7.003
	CRR073306	Third green 1	1.699
	CRR073307	Third green 2	1.356
	CRR073308	Third green 3	1.936
	CRR073309	Second white 1	0.690
	CRR073310	Second white 2	1.405
	CRR073311	Second white 3	1.829
	CRR073312	Silver flowering 1	1.271
	CRR073313	Silver flowering 2	0.876
	CRR073314	Silver flowering 3	0.664
	CRR073315	Gold flowering 1	5.481
	CRR073316	Gold flowering 2	9.164
	CRR073317	Gold flowering 3	2.965
	CRR073318	Tawny withering 1	5.918
	CRR073319	Tawny withering 2	4.492
	CRR073320	Tawny withering 3	5.131