Gene detail

Detail information of GWHGAAZE021683

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP07284.1	2.234E-116	unnamed protein product [Coffea canephora]
COG	YP_226417.1	5E-19	serine/threonine protein kinase
Swissprot	tr\|P27450\|CX32_ARATH	3E-95	Probable serine/threonine-protein kinase Cx32, chloroplastic (Precursor)
trEMBL	tr\|A0A068UGG6\|A0A068UGG6_COFCA	8E-117	Coffea canephora DH200=94 genomic scaffold, scaffold_26 {ECO:0000313\|EMBL:CDP07284.1}
TAIR10	AT1G76360.1	2E-80	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	59489458	59498673	+
GWHAAZE00000006	mRNA	59489458	59498673	+
GWHAAZE00000006	exon	59489458	59489631	+
GWHAAZE00000006	exon	59491120	59491255	+
GWHAAZE00000006	exon	59491350	59491486	+
GWHAAZE00000006	exon	59491592	59491737	+
GWHAAZE00000006	exon	59498244	59498673	+
GWHAAZE00000006	CDS	59489458	59489631	+
GWHAAZE00000006	CDS	59491120	59491255	+
GWHAAZE00000006	CDS	59491350	59491486	+
GWHAAZE00000006	CDS	59491592	59491737	+
GWHAAZE00000006	CDS	59498244	59498673	+

Transcript Sequence
>GWHTAAZE021707 ATGGCAACTCGTAACTTCAGTCCAGATCTGCAGCTGAGAAAGGGATATTTTCAAACGGTTTTCATTGGGTGGCTCAATGAGAAGACATACACCCCTTCAAAAATAGGCGTTGGAATGGCCGTTGCTGTTAAGAAATTTAATGTTAACAATCCACAGAATTTTGAAGCATGGAAGTTGGAGGTACAACTTTTTGGAAAATTTAATCATCCCAACCTCGTCAAGCTCTTGGGATATTGTTGGGAAGATAAGGAAATCTTCATTGTTTATGAGTACATGCAAAAGGGAAGCTTAGATAAGCACCTTTTCAAAGAAGGTGGAAATCCATTTTCATGGGATACACGGCTTAAAATATCAATAGGAGCAGCTCGAGGCCTTTGTTTCTTGCACAAGACAGAGAGTGGAGTTATACACCGCAAGGTTAAAACCTCAAATATATTGCTGGATGGGGATTTTAACGCAAAGCTATCGGATTTTGGATTGGCGAAATTGGGTTCCTTAGAAGAACATACAGGCCTTACAGCAAGTATTGCGGGGGCCTATGGTTTTTTAGCCCCTGAGTACATAGCCACTGGTAAATTACTTTACCTTAAATGCTGGTGGATTATAATTTTAACATCTCCATGTTGTGCAGGATGTTGGTACGCAAAGAGTGATGTCTATAGCTTTGGAGCAGTATTGCTGGAACTAATAACAGGACGACATGTAAGGGACGAGTTTTGGCAAAATGAGGAAGATGCTGATGATTTGGTTGAGTGGGCTAGGGTTTTCCTGCCCAATAAAACAGAGCTGAAAAACCTGATAGACCCAAGGCTGAAAAATGACTATCCTTTGGAAGAGGCATTCGAGTTAGCTTCACTCATACTTGTATGCCTTGAAACTTTCCCTAGAGACAGACCTACCATTGAACAAGTGTTGGAGTCTTTAGAACAAATTAATGGTTTCAATGTGAAACACAAGGAGAAGTCCGAAGCCGTGCAGACTGACATTCCTGAATCAAGTGGTACAACTCCAATGGAGGAGTAA

Network for GWHGAAZE021683

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	11	308	5.40E-39

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.535
	SRR3591706	second leaf	4.175
	SRR3591707	mature leaf	4.529
	SRR3591708	Shoot apex	14.264
	SRR3591709	Stem	11.695
	SRR3591710	White floral bud	2.273
	SRR3591711	White flower	5.045
	SRR3591712	Green floral bud	2.362
	SRR3591713	Yellow flower	2.642
SRP173429	SRR8316895	Juvenile bud stage	12.847
	SRR8316896	Juvenile bud stage	16.809
	SRR8316897	Juvenile bud stage	21.768
	SRR8316894	Third green stage	1.714
	SRR8316900	Third green stage	3.471
	SRR8316901	Third green stage	6.179
	SRR8316898	Complete white stage	0.725
	SRR8316899	Complete white stage	9.384
	SRR8316903	Complete white stage	1.056
	SRR8316902	Silver flowering stage	0.674
	SRR8316904	Silver flowering stage	0.707
	SRR8316905	Silver flowering stage	0.494
	SRR8316906	Gold flowering stage	2.411
	SRR8316907	Gold flowering stage	1.490
	SRR8316908	Gold flowering stage	6.864
SRP132670	SRR6706286	Control	1.750
	SRR6706287	Light intensity 50%	2.029
	SRR6706288	Light intensity 20%	2.173
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.803
	CNS0095593	Slightly white alabastrum(diploid) 2	13.465
	CNS0095594	Slightly white alabastrum(diploid) 3	13.348
	CNS0095595	Whole white alabastrum(diploid) 2	7.701
	CNS0095596	Whole white alabastrum(diploid) 3	1.795
	CNS0095597	Whole white alabastrum(diploid) 4	5.129
	CNS0095598	Silvery flower (diploied) 1	8.090
	CNS0095599	Silvery flower (diploied) 2	9.287
	CNS0095600	Silvery flower (diploied) 3	6.273
	CNS0095601	Golden flower (diploid) 1	20.958
	CNS0095602	Golden flower (diploid) 2	13.689
	CNS0095603	Golden flower (diploid) 3	13.805
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.094
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.394
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.500
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.452
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.800
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.605
	CNS0095610	Silvery flower (diploied) 1	6.268
	CNS0095611	Silvery flower (diploied) 2	6.030
	CNS0095612	Silvery flower (diploied) 3	3.194
	CNS0095613	Golden flower (tetraploid) 1	5.115
	CNS0095614	Golden flower (tetraploid) 2	6.839
	CNS0095615	Golden flower (tetraploid) 3	5.548
CRA001975	CRR073297	Stem 1	3.347
	CRR073298	Stem 2	2.699
	CRR073299	Stem 3	1.189
	CRR073300	Leaf 1	1.815
	CRR073301	Leaf 2	2.106
	CRR073302	Leaf 3	1.516
	CRR073303	Juvenile bud 1	0.893
	CRR073304	Juvenile bud 2	0.953
	CRR073305	Juvenile bud 3	1.754
	CRR073306	Third green 1	0.106
	CRR073307	Third green 2	0.186
	CRR073308	Third green 3	0.029
	CRR073309	Second white 1	0.005
	CRR073310	Second white 2	0.279
	CRR073311	Second white 3	0.143
	CRR073312	Silver flowering 1	1.094
	CRR073313	Silver flowering 2	0.092
	CRR073314	Silver flowering 3	0.124
	CRR073315	Gold flowering 1	1.579
	CRR073316	Gold flowering 2	5.791
	CRR073317	Gold flowering 3	2.388
	CRR073318	Tawny withering 1	5.746
	CRR073319	Tawny withering 2	15.863
	CRR073320	Tawny withering 3	10.581