Gene detail

Detail information of GWHGAAZE021779

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283185.1	0	PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic [Vitis vinifera]
COG	YP_003889933.1	1E-73	9-cis-epoxycarotenoid dioxygenase
Swissprot	tr\|Q9LRM7\|NCED6_ARATH	0	9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic (Precursor)
trEMBL	tr\|F6HS58\|F6HS58_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57517.1}
TAIR10	AT3G24220.1	6E-178	nine-cis-epoxycarotenoid dioxygenase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	61257673	61259280	-
GWHAAZE00000006	mRNA	61257673	61259280	-
GWHAAZE00000006	exon	61257673	61259280	-
GWHAAZE00000006	CDS	61257673	61259280	-

Transcript Sequence
>GWHTAAZE021803 CTCTAAAACAAAACAAAAACACCATGCAAATGCAATATTCCCACCACCATTTTACAACCTCGAAATTCCAAACCCACCTTAAACTGCACCCGTCCACTTCTACTTCTGCCAGGCCACATTTATTCATATGCAAAAGCAAAATACGCATCAACCCTGAAAAAAAAACTTCACCGCAAACTCACCTTTCCTTCACCGGCACCGGCGATATGCCCGGTACCCAAACCCGAAAACCCAAATGGGGGGTTGAACCGGTTCCAAAAGCTGGCTGCATCTGCCTTAGACTTGGTGGAGAAGAAACTAATTGAAGAATTAGACAAGGGTCACAAGCTGACAAAAACAGCTGACCCCGCGGTTCAACTAGAAGGAAACTTCGCTCCGGTTCACGAAAATCCGGTTCAGACAGGGCTCGAGGTGGTGGGTCAGATTCCGGCGGATCTGAAGGGGGTTTATCTCAGAAACGGCGCCAACCCCATGTTTTCACCCACCGGCGGCCACCACCTTTTCGACGGAGACGGGATGATCCACGCCGTCAAGTTGGAACGCGGTAATAAAGCGAGTTATTGTTGCCGGTTCACCCGAACCAATCGGTTGGTTCAGGAAGAAAAAATCGGGAGGGCTATATTTCCCAAGCCAATCGGGGAGCTGCATGGCCACCTCGGTTTGGCTCGGCTCGCTCTTTTTTACGCACGCGCCGCGATTGGGTTGGTGAGCGCCACACGTGGGATCGGCGTGGCCAACGCCGGGCTGGTTTACTTTAACGGCCGTTTACTCGCTATGTCAGAGGATGATCTACCTTACAGCGTCCGCATCAAGGGTGATGGTGATCTGGAGACGATCGGACGGTTGGATTTTAATGGCCAGCTTGATTGTCCAATGATCGCACACCCAAAGCTGGACCCCGTAACAGGTGAACTACACGCGCTGACTTATAATGTTGTGAATAGGCCCTATCTCAAGTACTTCAAATTCGACACGTCGGATAAGAAGTCACGTGACGTGACTATTTCCCTCCAGCAGCCAACCATGATCCATGACTTCGCCATTACGGAAAGTCACGTGATCATCCCGGACCAACAGGTGGTATTCAAGTTATCCGAGATGGTTCGGGGAGGGTCGCCCGTGGTCCACGACCCGAACAAGATGTCCCGGTTCGGAGTTTTATCAAAATCCGACCCAGACGGGTCGTCAATCCGGTGGATGGACGTGCCCGACTGCTTTTGCTTCCACCTATGGAATGCATGGGAAGAAAAGGACGAAAACAACGACATGGAAATCGTGGTAATTGGCTCGTGCATGACCCCTGCCGACTCCATTTTCACGGAGCAGCCTGACCCACTCCGGAGCGAACTATCCAAGATCCGGTTAAACCTGAAAAGTGGCAGGTCAACTAGGCGGGTCATAGTATCTGGGATGAATTTAGAGGCCGGCCAAGTGGACAGACAGCGACTTGGCCGGCAAACGCGATACGCTTATCTGGCGATCGCGGATCCCTGGCCAAAGTGCTGTGGGATCGCAAAGGTAGATTTGGAGACGGGAGAGGTGACGAAGTTCTTGTATGGGGACCACGCGTACGGGGGAGAGGCTTGTTTCGTGCCCGGTGGGGCTGGG

Network for GWHGAAZE021779

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03055.16	RPE65	123	533	4.10E-96

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09840	NCED	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.452
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	3.248
	SRR3591710	White floral bud	0.586
	SRR3591711	White flower	0.138
	SRR3591712	Green floral bud	0.305
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.027
	SRR8316896	Juvenile bud stage	0.029
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.131
	SRR8316903	Complete white stage	0.063
	SRR8316902	Silver flowering stage	0.007
	SRR8316904	Silver flowering stage	0.029
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.167
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.026
	SRR6706287	Light intensity 50%	0.071
	SRR6706288	Light intensity 20%	0.026
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.263
	CNS0095594	Slightly white alabastrum(diploid) 3	0.146
	CNS0095595	Whole white alabastrum(diploid) 2	0.340
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.408
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.262
	CNS0095601	Golden flower (diploid) 1	0.228
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.057
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.149
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.028
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.439
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.067
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.091
	CRR073299	Stem 3	0.002
	CRR073300	Leaf 1	0.050
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.418
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.156
	CRR073319	Tawny withering 2	1.105
	CRR073320	Tawny withering 3	0.358