Gene detail

Detail information of GWHGAAZE021787

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004239653.1	7.9134E-114	PREDICTED: aspartate--tRNA ligase, cytoplasmic [Solanum lycopersicum]
COG	YP_006705440.1	3E-42	aspartate--tRNA ligase
Swissprot	tr\|O48593\|SYNO_ARATH	0.00000004	Asparagine--tRNA ligase, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|K4C2U9\|K4C2U9_SOLLC	3E-114	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc05g056250.2.1}
TAIR10	AT4G31180.2	3E-82	Class II aminoacyl-tRNA and biotin synthetases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	61457484	61462860	+
GWHAAZE00000006	mRNA	61457484	61462860	+
GWHAAZE00000006	exon	61457484	61457568	+
GWHAAZE00000006	exon	61457629	61457846	+
GWHAAZE00000006	exon	61460608	61460694	+
GWHAAZE00000006	exon	61461989	61462279	+
GWHAAZE00000006	exon	61462359	61462469	+
GWHAAZE00000006	exon	61462555	61462608	+
GWHAAZE00000006	exon	61462765	61462860	+
GWHAAZE00000006	CDS	61457484	61457568	+
GWHAAZE00000006	CDS	61457629	61457846	+
GWHAAZE00000006	CDS	61460608	61460694	+
GWHAAZE00000006	CDS	61461989	61462279	+
GWHAAZE00000006	CDS	61462359	61462469	+
GWHAAZE00000006	CDS	61462555	61462608	+
GWHAAZE00000006	CDS	61462765	61462860	+

Transcript Sequence
>GWHTAAZE021811 ATGGAGGCGGCGCCTGCCGCCATAGTTGAGGAAGGGGAGGTTCTTGGAGCGACCTATGGGGAAATTCCCTGGGAAGATCTTCAATGCCGGTTCGTGCTCATTCGGGGGCACGCACAGTTGATCCGTAAGTTGGGAAACAAGATCGCATTTGTGCTGGTAAGGCAGAAAGGGTTTACAGTCCAGTGTGTGGTGTCGATCGAGTGCGACGCTGTCAGCGAAGGGGTGATGAAATTTGTGAAACCTTTGAATAAAGAGTCCGTGATTGATGTCGAGGGGATTGTTATGCCTTTGGAGTTAACGGTTAAACTTGTGCAGTTTTTACGTTCTAAGGGTTTTGTTGCAACCCACACACCAAAACTAATAGCAGGCTCAATAGAAGGTGGTTCAGAGAAACTTGTGCAATTTTTACGGTGTAAGGGTTTTGTTGCAACCCACACACCAAAACTAATATCTGGCTCAAGTGAAGGTGGTTCGGCGGTTTTTACATTAGATTACAAAGGGCAACCTGCGTGTCTAGCACAGTCACTGCAACTACATAAGCAGATGCTTATGTGTAGTGATTTTGGACGCGTTTTTGAGGTTGGATCGTTTTTCAGAGCGGAGAACTCGTTCACGCACAGACACCTGTGTGAATTTACTGGTCTTCAGGTTGAGATGGAGATCAAGGAAAACTATTCGGAGGTTCTCGACATCGTTGATAGTCTTTTTGTTTCAATTTTTGATGATTTGAACAACGAATGCCAAAAAGAGCTTGATACTATTGGGAAGCAGTATCCGTTTAAGCCTCTAAAGTATTTACGGAAAACGTTGAGTCTTACGTTTGAACAAGGTGTGCAAATGCTTAAGGATGCTGGTATGGAAGTGTCTCCCCTTTCTGACCTTGACACTGGATCAGAGAGAAAATTGGGTCAGCTTGTACTGGAGACGTACTTTTCTAACTGA

Network for GWHGAAZE021787

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0152	GO:0000166 nucleotide binding GOslim:molecular_function GO:0006418 tRNA aminoacylation for protein translation GOslim:biological_process map00970 Aminoacyl-tRNA biosynthesis GO:0004812 aminoacyl-tRNA ligase activity GOslim:molecular_function

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00152.21	tRNA-synt_2	134	280	2.10E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K22503	DARS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.593
	SRR3591706	second leaf	10.012
	SRR3591707	mature leaf	7.919
	SRR3591708	Shoot apex	16.852
	SRR3591709	Stem	11.571
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.087
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.083
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.152
SRP132670	SRR6706286	Control	0.040
	SRR6706287	Light intensity 50%	0.053
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.128
	CNS0095594	Slightly white alabastrum(diploid) 3	0.166
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.054
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.065
	CNS0095602	Golden flower (diploid) 2	0.036
	CNS0095603	Golden flower (diploid) 3	0.048
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.570
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.044
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.516
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.045
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.309
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.912
	CNS0095610	Silvery flower (diploied) 1	3.310
	CNS0095611	Silvery flower (diploied) 2	3.446
	CNS0095612	Silvery flower (diploied) 3	3.345
	CNS0095613	Golden flower (tetraploid) 1	2.646
	CNS0095614	Golden flower (tetraploid) 2	2.411
	CNS0095615	Golden flower (tetraploid) 3	3.902
CRA001975	CRR073297	Stem 1	0.058
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.006
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.012
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.068
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000