Gene detail

Detail information of GWHGAAZE021919

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011091372.1	0	PREDICTED: beta-amylase 1, chloroplastic [Sesamum indicum]
COG	YP_005034908.1	4E-50	putative beta-amylase precursor
Swissprot	tr\|Q9LIR6\|BAM1_ARATH	0	Beta-amylase 1, chloroplastic (Precursor)
trEMBL	tr\|F6HX09\|F6HX09_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59223.1}
TAIR10	AT3G23920.1	0	beta-amylase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	63972445	63975696	-
GWHAAZE00000006	mRNA	63972445	63975696	-
GWHAAZE00000006	exon	63972445	63973221	-
GWHAAZE00000006	exon	63973350	63973460	-
GWHAAZE00000006	exon	63973915	63974125	-
GWHAAZE00000006	exon	63975122	63975696	-
GWHAAZE00000006	CDS	63975122	63975696	-
GWHAAZE00000006	CDS	63973915	63974125	-
GWHAAZE00000006	CDS	63973350	63973460	-
GWHAAZE00000006	CDS	63972445	63973221	-

Transcript Sequence
>GWHTAAZE021945 ATGAGTTTACAGCACCAGATCGGAGCCTTATCAGGTACACCGATTACGTCAGATTCAGGTGGTATGACCGGAGATCCCACGTCAGCAACGGTGAGTGCGTCGGCGCTGCGGAGGTCACCGGAGGCGAGCCTCCGGTGCTCGGTTGAGAAACAGGCGTCCGATACAGACAGAGTATCCCCGTCGCCGCCGACGAGCCCGGTGACGCGGCCTGATCTGACGGCAGCGTGCCAGGCGTTCTCGTCGGAGGAGGTGGCAGTGAGGGAGTATCACGGTGGTGCGCAGTATAAGGAGAAGGGGGTGCCGGTTTACGTGATGATGCCTTTGGATAGTGTGACGATGGGGAATGGTGTGAATAGGATGAAGGCGATGAGCGCGAGTATGCACGCGCTGAGGAGTGCGGGTGTGGAAGGGGTGATGATGGACGTATGGTGGGGGCTGGTGGAGAGGGATGTGCCTGGGGTTTATAATTGGGGAGGGTATGTCGAGTTGATGGAGTTGGCTAAGAAGCATGGGCTTAAGGTTCAGGCTGTGATGTCCTTTCATCAGTGTGGTGGAAATGTTGGTGACTCTTGCACGATTCCTCTGCCCAAATGGGTTGTAGAGGAGATGGACAAGGATCCCGACCTTGCATACACAGATCAATGGGGGAGGAGAAACTATGAGTATCTATCCCTTGGTTGCGACTCTCTTCCGGTGCTGAAGGGACGGACGCCCGTCCAGTGTTATTCCGACTACATTCGTGCTTTCAAAGACAAATTTCAGCACCTACTTGGTGACACCATTGTGGAAATTCAAGTTGGAATGGGTCCGGCAGGCGAGCTCCGATATCCATCATACCCCGAGCAGAATGGAACATGGAAATTTCCTGGAATTGGAGCCTTCCAGTGTTATGACAAGTACATGATCAGTAGCTTGAAAGCTGCAGCAGAAGGCATTGGCAAGCCAAGATGGGGGAAAACTGGCCCAACCGATGCTGGCCACTACAACAAATGGCCCGAAGACACGGATTTTTTCCGAAAAGAAGGCAGAGGTTGGAATGGACCATATGGTGAATTTTTCCTCACGTGGTACTCTCAGTTGCTCTTAGACCATGGTGAAAGGATATTATCGTCAGCCAAGGCCATCTTTGAGAATACAGGTGTCAAATTTTCGGTCAAAGTTGCTGGTATCCACTGGCACTATGGGACCCGTTCCCATGCTCCCGAGCTCACTGCAGGGTACTACAACACCCGTTTCCGAGATGGGTACCTTCCCATTGCTCAAATGCTGGCCCGTCATGGAGCCATATTCAATTTCACTTGCATCGAGATGCGTGACCACGAGCAGCCACAGGACGCTCTGTGTGCGCCTGAGAAGCTGGTTAGGCAAGTGGCTTTAGCCACCCGTAAAGCAGGGGTCCCACTGGCGGGAGAGAATGCGTTGCCCCGATACGACAATTATGCGCACGAGCAGATCTTACGAGCATCTTCTCTGAATCTTCATGGTGATGGAGAGCAAGGAGAGATGTGTGCTTTTACTTATTTGAGGATGAACCCTGACTTGTTCCAAGAGGAAAATTGGAGACGGTTTGTGGGGTTTGTGAAGAAAATGAAAGAAGGGAAAGATGGGAACCGGTGCCGGGAGCAGGTGGCCGAGCACTTAGTGCAGGAAGCTGCTGTTGCTCTCATGCACTAA

Network for GWHGAAZE021919

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01373.18	Glyco_hydro_14	103	526	5.90E-137

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01177	E3.2.1.2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0000272	biological_process	polysaccharide catabolic process
GO:0016161	molecular_function	beta-amylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.345
	SRR3591706	second leaf	8.119
	SRR3591707	mature leaf	26.668
	SRR3591708	Shoot apex	10.073
	SRR3591709	Stem	22.347
	SRR3591710	White floral bud	25.825
	SRR3591711	White flower	26.288
	SRR3591712	Green floral bud	29.659
	SRR3591713	Yellow flower	9.258
SRP173429	SRR8316895	Juvenile bud stage	23.894
	SRR8316896	Juvenile bud stage	27.768
	SRR8316897	Juvenile bud stage	11.682
	SRR8316894	Third green stage	13.131
	SRR8316900	Third green stage	43.732
	SRR8316901	Third green stage	41.608
	SRR8316898	Complete white stage	23.175
	SRR8316899	Complete white stage	104.323
	SRR8316903	Complete white stage	26.912
	SRR8316902	Silver flowering stage	17.515
	SRR8316904	Silver flowering stage	19.973
	SRR8316905	Silver flowering stage	9.208
	SRR8316906	Gold flowering stage	30.597
	SRR8316907	Gold flowering stage	33.286
	SRR8316908	Gold flowering stage	27.350
SRP132670	SRR6706286	Control	99.303
	SRR6706287	Light intensity 50%	87.074
	SRR6706288	Light intensity 20%	87.309
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.335
	CNS0095593	Slightly white alabastrum(diploid) 2	24.767
	CNS0095594	Slightly white alabastrum(diploid) 3	23.457
	CNS0095595	Whole white alabastrum(diploid) 2	26.482
	CNS0095596	Whole white alabastrum(diploid) 3	23.347
	CNS0095597	Whole white alabastrum(diploid) 4	25.494
	CNS0095598	Silvery flower (diploied) 1	38.360
	CNS0095599	Silvery flower (diploied) 2	39.415
	CNS0095600	Silvery flower (diploied) 3	42.983
	CNS0095601	Golden flower (diploid) 1	45.152
	CNS0095602	Golden flower (diploid) 2	47.843
	CNS0095603	Golden flower (diploid) 3	47.123
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.251
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.947
	CNS0095606	Slightly white alabastrum(tetraploid) 3	53.098
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.214
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.302
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.744
	CNS0095610	Silvery flower (diploied) 1	46.713
	CNS0095611	Silvery flower (diploied) 2	52.023
	CNS0095612	Silvery flower (diploied) 3	5.607
	CNS0095613	Golden flower (tetraploid) 1	17.530
	CNS0095614	Golden flower (tetraploid) 2	33.222
	CNS0095615	Golden flower (tetraploid) 3	14.673
CRA001975	CRR073297	Stem 1	19.352
	CRR073298	Stem 2	21.992
	CRR073299	Stem 3	26.057
	CRR073300	Leaf 1	34.157
	CRR073301	Leaf 2	31.105
	CRR073302	Leaf 3	42.738
	CRR073303	Juvenile bud 1	55.045
	CRR073304	Juvenile bud 2	43.083
	CRR073305	Juvenile bud 3	61.779
	CRR073306	Third green 1	24.093
	CRR073307	Third green 2	22.569
	CRR073308	Third green 3	21.781
	CRR073309	Second white 1	8.872
	CRR073310	Second white 2	7.849
	CRR073311	Second white 3	4.418
	CRR073312	Silver flowering 1	3.764
	CRR073313	Silver flowering 2	8.191
	CRR073314	Silver flowering 3	5.046
	CRR073315	Gold flowering 1	36.570
	CRR073316	Gold flowering 2	40.756
	CRR073317	Gold flowering 3	47.031
	CRR073318	Tawny withering 1	28.914
	CRR073319	Tawny withering 2	24.853
	CRR073320	Tawny withering 3	26.923