Gene detail

Detail information of GWHGAAZE021943

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008390990.1	2.76372E-45	PREDICTED: chlorophyllase-2, chloroplastic [Malus domestica]
Swissprot	tr\|Q9M7I7\|CLH2_ARATH	4E-37	Chlorophyllase-2, chloroplastic (Precursor)
trEMBL	tr\|D7T734\|D7T734_VITVI	2E-44	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI26305.3}
TAIR10	AT5G43860.1	3E-32	chlorophyllase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	64435644	64437445	+
GWHAAZE00000006	mRNA	64435644	64437445	+
GWHAAZE00000006	exon	64435644	64435775	+
GWHAAZE00000006	exon	64435898	64436101	+
GWHAAZE00000006	exon	64437023	64437445	+
GWHAAZE00000006	CDS	64435644	64435775	+
GWHAAZE00000006	CDS	64435898	64436101	+
GWHAAZE00000006	CDS	64437023	64437445	+

Transcript Sequence
>GWHTAAZE021969 ATGATACTGCGTTTGAAGTTCTCAGCTCTGATAGGCATTGATCCAGTCGATGGCATGGACACAGGGAAACAGACACCACCTCCAGTCCTAACCTACACCCCTCGCTCCTTTGACCTCAACATGGCCGTTCTGGATTATGGGCATGTTGATATGTTGGATGATGAGACTAAGGGAGTGAGAGGGAAGGCTACTTATTGTTTGTGCAAAAATGGGAAGGCCAGAGAGCCCATGAGGAGGTTTGTTGGGGGGATTGTGGTTGCTTTTTTGATGGGTTATTTGGATGGGAATTTTGGGGATTTGGTGGCTATAAAAGAGAAGCATGAGTTGGTTCCTTTGGTGTATTTACAAAGCTTCCGCTCCGCATTCACCCCTCATTCTTTTGACCTCAACATGGCCGTTCTGGTGATTAGCTCAAGCCTAGGTGAGATTAGAAAGAACTGGTTGAACCCCCCTTGCTCGCCCAAGGAGGGAACCACAAGGACTTTTAATGAGCGCCACAAGCCGGCTTGTTACTTTGTGGCTAAGATTTATAGGCATGTGGATATGTTGGATGATGATACCAGGGGAGTCCGAGAGAAGGCTACTTATTCTTTGTGTGTAAATGGGAAAGCTAGAGAGTGTATTTTTTTATTTTTTTTTATGGTTGGGGGGGAGGATTGTGGTTGCTTTTTTCAAGGGTTATTTGGATGGGGATTTGGTGGTATAAAAGAGAAGCATGAATTGGTTCCTTTGGTGCTTCAAAGAGTTGAGTTTTCTTGA

Network for GWHGAAZE021943

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07224.12	Chlorophyllase	44	112	6.80E-22
PF12740.8	Chlorophyllase2	122	204	6.60E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08099	E3.1.1.14	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0015996	biological_process	chlorophyll catabolic process
GO:0047746	molecular_function	chlorophyllase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.777
	SRR3591706	second leaf	2.783
	SRR3591707	mature leaf	2.950
	SRR3591708	Shoot apex	2.572
	SRR3591709	Stem	1.182
	SRR3591710	White floral bud	0.152
	SRR3591711	White flower	0.172
	SRR3591712	Green floral bud	0.914
	SRR3591713	Yellow flower	0.005
SRP173429	SRR8316895	Juvenile bud stage	0.154
	SRR8316896	Juvenile bud stage	0.361
	SRR8316897	Juvenile bud stage	0.021
	SRR8316894	Third green stage	0.070
	SRR8316900	Third green stage	0.430
	SRR8316901	Third green stage	0.222
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.298
	SRR8316903	Complete white stage	0.015
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.005
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.019
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.144
	SRR6706287	Light intensity 50%	0.020
	SRR6706288	Light intensity 20%	0.077
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.007
	CNS0095593	Slightly white alabastrum(diploid) 2	0.403
	CNS0095594	Slightly white alabastrum(diploid) 3	0.179
	CNS0095595	Whole white alabastrum(diploid) 2	0.457
	CNS0095596	Whole white alabastrum(diploid) 3	0.567
	CNS0095597	Whole white alabastrum(diploid) 4	0.236
	CNS0095598	Silvery flower (diploied) 1	0.152
	CNS0095599	Silvery flower (diploied) 2	0.180
	CNS0095600	Silvery flower (diploied) 3	0.056
	CNS0095601	Golden flower (diploid) 1	0.138
	CNS0095602	Golden flower (diploid) 2	0.144
	CNS0095603	Golden flower (diploid) 3	0.082
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.149
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.173
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.111
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.013
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.095
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.137
	CNS0095610	Silvery flower (diploied) 1	0.044
	CNS0095611	Silvery flower (diploied) 2	0.192
	CNS0095612	Silvery flower (diploied) 3	0.210
	CNS0095613	Golden flower (tetraploid) 1	0.033
	CNS0095614	Golden flower (tetraploid) 2	0.034
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.982
	CRR073298	Stem 2	0.597
	CRR073299	Stem 3	0.437
	CRR073300	Leaf 1	0.403
	CRR073301	Leaf 2	0.348
	CRR073302	Leaf 3	0.391
	CRR073303	Juvenile bud 1	0.250
	CRR073304	Juvenile bud 2	0.029
	CRR073305	Juvenile bud 3	0.073
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.116
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.018
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	3.307
	CRR073316	Gold flowering 2	4.134
	CRR073317	Gold flowering 3	3.654
	CRR073318	Tawny withering 1	0.555
	CRR073319	Tawny withering 2	0.227
	CRR073320	Tawny withering 3	0.668