Gene detail

Detail information of GWHGAAZE022102

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010245367.1	0	PREDICTED: tubby-like F-box protein 3 [Nelumbo nucifera]
Swissprot	tr\|Q10LG8\|TLP6_ORYSJ	0	Tubby-like F-box protein 6
trEMBL	tr\|A0A067G8W6\|A0A067G8W6_CITSI	0	Tubby-like F-box protein {ECO:0000256\|RuleBase:RU361125}
TAIR10	AT2G47900.3	1E-150	tubby like protein 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	66961791	66964529	+
GWHAAZE00000006	mRNA	66961791	66964529	+
GWHAAZE00000006	exon	66961791	66961973	+
GWHAAZE00000006	exon	66962565	66962652	+
GWHAAZE00000006	exon	66963127	66963256	+
GWHAAZE00000006	exon	66963346	66963525	+
GWHAAZE00000006	exon	66964052	66964529	+
GWHAAZE00000006	CDS	66961791	66961973	+
GWHAAZE00000006	CDS	66962565	66962652	+
GWHAAZE00000006	CDS	66963127	66963256	+
GWHAAZE00000006	CDS	66963346	66963525	+
GWHAAZE00000006	CDS	66964052	66964529	+

Transcript Sequence
>GWHTAAZE022130 ATGCCTTTAGAGCTATTGAGGGAGGTATTGATGAGGATTGAATCATCTGAAAACAATTGGCCTTTGAGGAAGAATGTGGTTGCTTGTGGTGGTGTTTGCCGGAGCTGGAGGGAGATTGTCAAGGAGATTGTGAGAACACCCGAAGTTTCTGGGATTATAACTTTCCCTATTTCAGTCAAGCAGCCTGGTCCAAGAGAGTCTTTGCTGCGGTGTTTTATAAAGCGGAACCGGTCTATGCAAACATATCACCTCTACCTCAACTTAACTCAAGCACTTGCTGATGATGGAAAATTTCTTCTTGCCGCTCGCAAATGTAGACGTACCACTTGCACGGATTACATTATATCGCTCAATGCTGATGACATGTCCAAGGGAAGCAGTACATATATTGGGAAATTAAGATCAAACTTTTTGGGAACTAAGTTTGTAATATATGATGGTCTACCACCTCATGCTGGAGCTAAAATAAGTAAGAGTCGTTCCACTAGGCTGGTAGGATCAAAACAAGTTTCTCCTAGAGTTCCAGCTGGCAGCTATCCGGTGGCTCACATCTCGTATGAGTTGAATGTTCTAGGATCGAGGGGGCCAAGAAGAATGCAGTGTATCATGGACGCCATCCCAAGTTCTGCCGTTGAACCTGGAGGTGTGGCTCCAACTCAGACTGAGTTCCATCCCGGCAACTATGATTCATTTCCATCACTCCCTTTCTTCCGATCAAAATCAAGTCGCATTGAGAAATTTTTGTCCAATTCCTTACCTAGCGGTCAGAGAGATGGACCGTTGGTCTTGAAAAATAAATCCCCAAGGTGGCACGAGCAACTCCAGTGCTGGTGTTTGAACTTTCACGGGCGTGTAACAGTTGCCTCGGTGAAAAACTTTCAGCTGGTGGCTTCTCCGGCTAGTGGACAACCAGCTCGGCCCGAACACGAAAAGGTCATCCTCCAGTTTGGGAAAGTAGGGAAGGATGTATTTACCATGGATTATCGATACCCAATATCTGTGTTCCAGGCATTTGCCATCTGTCTTAGCAGCTTTGACACGAAGATTGCTTGTGAATGA

Network for GWHGAAZE022102

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	1	47	2.70E-06
PF01167.19	Tub	61	347	1.20E-112

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TUB
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	41.855
	SRR3591706	second leaf	12.254
	SRR3591707	mature leaf	19.189
	SRR3591708	Shoot apex	16.577
	SRR3591709	Stem	104.417
	SRR3591710	White floral bud	50.229
	SRR3591711	White flower	57.337
	SRR3591712	Green floral bud	40.330
	SRR3591713	Yellow flower	45.397
SRP173429	SRR8316895	Juvenile bud stage	13.616
	SRR8316896	Juvenile bud stage	19.662
	SRR8316897	Juvenile bud stage	5.700
	SRR8316894	Third green stage	10.162
	SRR8316900	Third green stage	24.666
	SRR8316901	Third green stage	18.028
	SRR8316898	Complete white stage	12.618
	SRR8316899	Complete white stage	47.491
	SRR8316903	Complete white stage	15.461
	SRR8316902	Silver flowering stage	14.564
	SRR8316904	Silver flowering stage	18.487
	SRR8316905	Silver flowering stage	7.516
	SRR8316906	Gold flowering stage	28.717
	SRR8316907	Gold flowering stage	28.865
	SRR8316908	Gold flowering stage	50.704
SRP132670	SRR6706286	Control	31.848
	SRR6706287	Light intensity 50%	36.105
	SRR6706288	Light intensity 20%	41.324
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.720
	CNS0095593	Slightly white alabastrum(diploid) 2	11.003
	CNS0095594	Slightly white alabastrum(diploid) 3	9.558
	CNS0095595	Whole white alabastrum(diploid) 2	8.562
	CNS0095596	Whole white alabastrum(diploid) 3	7.061
	CNS0095597	Whole white alabastrum(diploid) 4	9.531
	CNS0095598	Silvery flower (diploied) 1	18.003
	CNS0095599	Silvery flower (diploied) 2	14.321
	CNS0095600	Silvery flower (diploied) 3	37.712
	CNS0095601	Golden flower (diploid) 1	14.338
	CNS0095602	Golden flower (diploid) 2	35.708
	CNS0095603	Golden flower (diploid) 3	33.481
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.981
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.305
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.330
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.089
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.131
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.609
	CNS0095610	Silvery flower (diploied) 1	73.298
	CNS0095611	Silvery flower (diploied) 2	55.869
	CNS0095612	Silvery flower (diploied) 3	55.147
	CNS0095613	Golden flower (tetraploid) 1	36.204
	CNS0095614	Golden flower (tetraploid) 2	48.952
	CNS0095615	Golden flower (tetraploid) 3	43.899
CRA001975	CRR073297	Stem 1	30.756
	CRR073298	Stem 2	34.710
	CRR073299	Stem 3	28.059
	CRR073300	Leaf 1	32.595
	CRR073301	Leaf 2	32.515
	CRR073302	Leaf 3	31.632
	CRR073303	Juvenile bud 1	26.809
	CRR073304	Juvenile bud 2	15.785
	CRR073305	Juvenile bud 3	29.604
	CRR073306	Third green 1	13.107
	CRR073307	Third green 2	11.532
	CRR073308	Third green 3	9.835
	CRR073309	Second white 1	13.897
	CRR073310	Second white 2	14.577
	CRR073311	Second white 3	12.028
	CRR073312	Silver flowering 1	8.608
	CRR073313	Silver flowering 2	4.327
	CRR073314	Silver flowering 3	9.730
	CRR073315	Gold flowering 1	10.487
	CRR073316	Gold flowering 2	14.697
	CRR073317	Gold flowering 3	6.953
	CRR073318	Tawny withering 1	33.617
	CRR073319	Tawny withering 2	14.363
	CRR073320	Tawny withering 3	31.593