Gene detail

Detail information of GWHGAAZE022105

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP40021.1	0	hypothetical protein JCGZ_02019 [Jatropha curcas]
COG	YP_002018055.1	1E-143	NmrA family protein
Swissprot	tr\|J9RYI6\|DCVR_CUCSA	0	Divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic (Precursor)
trEMBL	tr\|A0A067KUX3\|A0A067KUX3_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP40021.1}
TAIR10	AT5G18660.1	1E-179	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	67008199	67009449	+
GWHAAZE00000006	mRNA	67008199	67009449	+
GWHAAZE00000006	exon	67008199	67009449	+
GWHAAZE00000006	CDS	67008199	67009449	+

Transcript Sequence
>GWHTAAZE022133 ATGGCCACCTGTCCTTCCTTCAATCGCCTCACTCTCCACTCCCCAAAAGCTCAAAGCTTTAAAGGACGCTTGTCTTCTCATTTCATCAATCAAATTCAGGTAAACTCAATCCCTCATCCTTTTATCCCTCTAAATTTATCACAACCCTCAAAATTTACTAGACAAAGATTCCAACCAATTACGGCTTCAACTACCCCAGTTGTTGAAACTCCCAAATCTTCATTCAGAACCAAAAACCCAAAAGATATCAATGTTTTGGTTGTGGGTTCAACTGGGTACATTGGTAGATTTGTTGTTAAAGAGCTAACCAACAGAGGATTTAATGTTATAGCTGTATCTAGAGAGAAGAGTGGTATTAGAGGCAAAAATAGCAAAGAAGAGACCTTAAAACAGCTAAATGGTGCCAATGTGTGCTTCTCAGATGTGACCCAATTGGACTCTTTAGACAAAAGTTTAGAGTATTTAGGGGTTTCAATTGATGTTGTTGTTTCTTGCCTAGCTAGCCGATCTGGTGGTGTTAAAGATTCTTGGTTAATCGATTATGAAGCCACGAAAAATAGCCTTGTTGCCGGTAGGAATTATGGGGCTTCACATTTTGTTCTATTATCTGCAATTTGTGTGCAAAAGCCCCTTTTAGAATTTCAACGCGCTAAGTTGAAATTTGAGGCGGAATTGATGAAAGAAGCCGAAAATGATGATGGATTTACGTATAGTATTGTGAGGCCAACTGCATTTTTCAAGAGTTTGGGGGGTCAAGTTGAATTGGTGAAAGAGGGCAAGCCTTATGTGATGTTTGGGGACGGTAAATTGTGCGCTTGCAAGCCGATTAGTGAGCAAGATTTGGCCTCGTTTATCTCGGATTGCGTGTTGAGCGAGGATAAGATTAACCGGGTTTTGCCTATTGGGGGTCCGGGGAAGGCCTTGACACCATTGGAGCAAGGGGAGATGTTGTTTAGGCTAGTGGGAAAAGAGCCCAAGTTCTTTAAAGTTCCCATTGAAATAATGGATTTCGCCATTGGGGTTCTTGATTTTCTTGTCAAGATTTTTCCTTCAATGGAAGATGTGGCTGAGTTTGGGAAAATTGGTAGGTATTATGCGGCTGAGAGCATGTTGATTTTGGATCCTGAGACTGGAGAGTATAATGCTGAGAAAACGCCTAGTTATGGAAAGGATACATTGGAAGATTTCTTTGCAAGGGTACTTAGGGAAGGGATGGCTGGTCAAGAATTGGGAGAGCAAACCATTTTCTAA

Network for GWHGAAZE022105

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13460.7	NAD_binding_10	89	290	1.00E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19073	DVR	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.292
	SRR3591706	second leaf	89.577
	SRR3591707	mature leaf	48.403
	SRR3591708	Shoot apex	44.939
	SRR3591709	Stem	14.371
	SRR3591710	White floral bud	4.885
	SRR3591711	White flower	6.800
	SRR3591712	Green floral bud	7.659
	SRR3591713	Yellow flower	1.121
SRP173429	SRR8316895	Juvenile bud stage	13.504
	SRR8316896	Juvenile bud stage	9.858
	SRR8316897	Juvenile bud stage	4.296
	SRR8316894	Third green stage	7.487
	SRR8316900	Third green stage	16.915
	SRR8316901	Third green stage	13.509
	SRR8316898	Complete white stage	1.724
	SRR8316899	Complete white stage	14.959
	SRR8316903	Complete white stage	3.711
	SRR8316902	Silver flowering stage	1.509
	SRR8316904	Silver flowering stage	1.582
	SRR8316905	Silver flowering stage	0.868
	SRR8316906	Gold flowering stage	2.052
	SRR8316907	Gold flowering stage	1.934
	SRR8316908	Gold flowering stage	1.397
SRP132670	SRR6706286	Control	12.694
	SRR6706287	Light intensity 50%	11.222
	SRR6706288	Light intensity 20%	12.087
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.171
	CNS0095593	Slightly white alabastrum(diploid) 2	8.254
	CNS0095594	Slightly white alabastrum(diploid) 3	5.739
	CNS0095595	Whole white alabastrum(diploid) 2	8.162
	CNS0095596	Whole white alabastrum(diploid) 3	8.542
	CNS0095597	Whole white alabastrum(diploid) 4	4.857
	CNS0095598	Silvery flower (diploied) 1	16.647
	CNS0095599	Silvery flower (diploied) 2	8.232
	CNS0095600	Silvery flower (diploied) 3	6.720
	CNS0095601	Golden flower (diploid) 1	10.269
	CNS0095602	Golden flower (diploid) 2	6.176
	CNS0095603	Golden flower (diploid) 3	6.793
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.300
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.721
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.456
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.874
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.135
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.927
	CNS0095610	Silvery flower (diploied) 1	7.400
	CNS0095611	Silvery flower (diploied) 2	12.175
	CNS0095612	Silvery flower (diploied) 3	2.738
	CNS0095613	Golden flower (tetraploid) 1	2.064
	CNS0095614	Golden flower (tetraploid) 2	4.231
	CNS0095615	Golden flower (tetraploid) 3	1.569
CRA001975	CRR073297	Stem 1	12.348
	CRR073298	Stem 2	11.391
	CRR073299	Stem 3	8.705
	CRR073300	Leaf 1	6.393
	CRR073301	Leaf 2	6.562
	CRR073302	Leaf 3	3.627
	CRR073303	Juvenile bud 1	2.995
	CRR073304	Juvenile bud 2	1.628
	CRR073305	Juvenile bud 3	5.547
	CRR073306	Third green 1	0.443
	CRR073307	Third green 2	0.030
	CRR073308	Third green 3	0.228
	CRR073309	Second white 1	0.725
	CRR073310	Second white 2	0.108
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.036
	CRR073313	Silver flowering 2	0.065
	CRR073314	Silver flowering 3	0.056
	CRR073315	Gold flowering 1	23.184
	CRR073316	Gold flowering 2	31.962
	CRR073317	Gold flowering 3	20.976
	CRR073318	Tawny withering 1	5.629
	CRR073319	Tawny withering 2	2.496
	CRR073320	Tawny withering 3	4.021