Gene detail

Detail information of GWHGAAZE022329

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009351777.1	0	PREDICTED: pyruvate kinase, cytosolic isozyme [Pyrus x bretschneideri]
COG	YP_002508078.1	6E-134	pyruvate kinase
Swissprot	tr\|P22200\|KPYC_SOLTU	0	Pyruvate kinase, cytosolic isozyme
trEMBL	tr\|A0A059A945\|A0A059A945_EUCGR	0	Pyruvate kinase {ECO:0000256\|RuleBase:RU000504}
TAIR10	AT5G08570.1	0	Pyruvate kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	70594601	70596823	-
GWHAAZE00000006	mRNA	70594601	70596823	-
GWHAAZE00000006	exon	70594601	70595413	-
GWHAAZE00000006	exon	70595534	70595995	-
GWHAAZE00000006	exon	70596566	70596823	-
GWHAAZE00000006	CDS	70596566	70596823	-
GWHAAZE00000006	CDS	70595534	70595995	-
GWHAAZE00000006	CDS	70594601	70595413	-

Transcript Sequence
>GWHTAAZE022359 ATGGCTAACATAGATATAGAGGGGATCTTGAAGGAAATTCCAAACGATGGCCGTGTTCCTAAAACAAAGATTGTGTGTACTCTGGGTCCAGCATCTAGATCTGTGCCAATGCTCGAGAAGCTTCTTAAGGCCGGGATGAACGTTGCCAGGTTTAACTTCTCCCACGGCACCCATGAGTATCATCAGGAGACCTTGGACAATCTCAAGATTGCTCAGCATAATACTCAGATCTTGTGCGCCGTCATGCTCGATACCAAGGGACCTGAGATTCGAACTGGTTTCCTAAAGGATGGAAAGCCTATCCAACTCAAGGAAGGCAATGAAATAACTATTAGTACTGATTACACCATCAAGGGGGATGAGGGGACAATCTCCATGAGCTACAAAAAATTGCCTGTGGACTTGAAGCCTGGAAATGTCATCTTGTGTGCAGACGGCACAATCACCCTCACTGTCTTGTCATGTGATCCAGCTGCTGGGACAGTAAGATGCCGCTGCGAGAACACTGCTATGCTTGGTGAGAGGAAGAATGTCAATCTTCCCGGAGTTGTAGTGGATCTTCCAACACTTACAGAGAAGGACAAGGAAGATATCCTCGAATGGGGTGTACCTAACAATATTGATATGATTGCTCTTTCATTTGTGCGCAAGGGCTCTGATCTTGTTAATGTTCGCAAGGTCCTTGGACTCCATGCCAAGACTATACAGTTGATGTCAAAGGTTGAGAATCAGGAGGGAGTAATCAACTTTGACGAAATCTTGCGTGAGACTGATTCATTCATGGTTGCTCGCGGTGATCTTGGAATGGAAATCCCAGTTGAGAAGATCTTTCTGGCACAGAAAATGATGATATACAAGTGTAATCTTGTTGGCAAGCCTGTGGTGACTGCCACCCAAATGCTCGAGTCCATGATCAAGTCTCCACGTCCCACCCGTGCAGAGGCTACCGATGTTGCTAACGCTGTGCTGGATGGCAGCGACTGTGTAATGCTTAGTGGGGAGAGTGCAGCTGGGGCCTACCCAGAGGTTGCTGTGAAAATCATGGCTCGAATTTGTATTGAGGCAGAGTCCTCCCTCGACTATAGGCTAATCTTCAAAGAGATGATTAAGTCGACCCCACTGCCAATGAGCCCACTGGAGAGTCTTGCATCTTCAGCCGTACGCACGGCCAACAAGGCCAGAGCCAAACTCATTGTTGTGCTGACACGTGGGGGGACCACGGCCAAGCTAGTTGCCAAGTACCGGCCATCTGTCCCAATTCTATCGGTGGTGGTCCCGGTTTTGACTACGGACTCATTTGATTGGACTTGCAGTGAGGAGACACCAGCAAGGCATAGTCTTTTATACAGGGGATTAATTCCACTTCTTGCAGAAGGGTCTGCAAAGGCCACTGATGCAGAGTCGACTGAGGAGATATTGGAAGCAGCCTTGAAGTCGCCAACAGCTAGAAAGCTGTGCCAGCCTGGTGATGCTGTTGTTGTGCTTCATCGTATTGGATCCTCCTCTGTTATTAAGATCTGTGTAGTCAAGTAA

Network for GWHGAAZE022329

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00224.22	PK	20	362	5.20E-158
PF02887.17	PK_C	380	500	7.80E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00873	PK, pyk	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Pyruvate metabolism	map00620
		Purine metabolism	map00230
		Glucagon signaling pathway	map04922

Gene Ontology

GO term	Ontology	Name
GO:0006096	biological_process	glycolytic process
GO:0004743	molecular_function	pyruvate kinase activity
GO:0000287	molecular_function	magnesium ion binding
GO:0030955	molecular_function	potassium ion binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	96.695
	SRR3591706	second leaf	29.117
	SRR3591707	mature leaf	7.404
	SRR3591708	Shoot apex	62.781
	SRR3591709	Stem	68.175
	SRR3591710	White floral bud	236.156
	SRR3591711	White flower	204.970
	SRR3591712	Green floral bud	138.002
	SRR3591713	Yellow flower	106.991
SRP173429	SRR8316895	Juvenile bud stage	65.910
	SRR8316896	Juvenile bud stage	86.277
	SRR8316897	Juvenile bud stage	44.672
	SRR8316894	Third green stage	45.715
	SRR8316900	Third green stage	161.129
	SRR8316901	Third green stage	139.548
	SRR8316898	Complete white stage	119.230
	SRR8316899	Complete white stage	195.431
	SRR8316903	Complete white stage	148.886
	SRR8316902	Silver flowering stage	100.948
	SRR8316904	Silver flowering stage	104.133
	SRR8316905	Silver flowering stage	44.745
	SRR8316906	Gold flowering stage	68.126
	SRR8316907	Gold flowering stage	119.336
	SRR8316908	Gold flowering stage	114.514
SRP132670	SRR6706286	Control	150.848
	SRR6706287	Light intensity 50%	167.763
	SRR6706288	Light intensity 20%	176.368
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	82.601
	CNS0095593	Slightly white alabastrum(diploid) 2	105.057
	CNS0095594	Slightly white alabastrum(diploid) 3	71.434
	CNS0095595	Whole white alabastrum(diploid) 2	92.024
	CNS0095596	Whole white alabastrum(diploid) 3	97.832
	CNS0095597	Whole white alabastrum(diploid) 4	93.177
	CNS0095598	Silvery flower (diploied) 1	67.889
	CNS0095599	Silvery flower (diploied) 2	63.246
	CNS0095600	Silvery flower (diploied) 3	122.343
	CNS0095601	Golden flower (diploid) 1	42.320
	CNS0095602	Golden flower (diploid) 2	62.386
	CNS0095603	Golden flower (diploid) 3	58.522
	CNS0095604	Slightly white alabastrum(tetraploid) 1	109.401
	CNS0095605	Slightly white alabastrum(tetraploid) 2	92.284
	CNS0095606	Slightly white alabastrum(tetraploid) 3	192.587
	CNS0095607	Whole white alabastrum(tetraploid) 1	63.957
	CNS0095608	Whole white alabastrum(tetraploid) 2	67.923
	CNS0095609	Whole white alabastrum(tetraploid) 3	135.390
	CNS0095610	Silvery flower (diploied) 1	114.910
	CNS0095611	Silvery flower (diploied) 2	125.774
	CNS0095612	Silvery flower (diploied) 3	111.891
	CNS0095613	Golden flower (tetraploid) 1	48.871
	CNS0095614	Golden flower (tetraploid) 2	66.789
	CNS0095615	Golden flower (tetraploid) 3	32.680
CRA001975	CRR073297	Stem 1	147.981
	CRR073298	Stem 2	143.559
	CRR073299	Stem 3	178.539
	CRR073300	Leaf 1	198.377
	CRR073301	Leaf 2	212.426
	CRR073302	Leaf 3	255.874
	CRR073303	Juvenile bud 1	294.260
	CRR073304	Juvenile bud 2	303.441
	CRR073305	Juvenile bud 3	320.781
	CRR073306	Third green 1	250.154
	CRR073307	Third green 2	232.751
	CRR073308	Third green 3	226.940
	CRR073309	Second white 1	242.916
	CRR073310	Second white 2	135.908
	CRR073311	Second white 3	90.264
	CRR073312	Silver flowering 1	114.018
	CRR073313	Silver flowering 2	161.833
	CRR073314	Silver flowering 3	147.940
	CRR073315	Gold flowering 1	37.381
	CRR073316	Gold flowering 2	37.626
	CRR073317	Gold flowering 3	47.589
	CRR073318	Tawny withering 1	171.646
	CRR073319	Tawny withering 2	145.031
	CRR073320	Tawny withering 3	165.148