Gene detail

Detail information of GWHGAAZE022366

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009758945.1	PREDICTED: biotin carboxylase 1, chloroplastic [Nicotiana sylvestris]
COG	YP_007121176.1	acetyl-CoA carboxylase, biotin carboxylase subunit
Swissprot	tr\|B9HBA8\|ACCC1_POPTR	Biotin carboxylase 1, chloroplastic (Precursor)
trEMBL	tr\|H9CCH6\|H9CCH6_TOBAC	Acetyl-CoA carboxylase {ECO:0000313\|EMBL:AFE88229.1}
TAIR10	AT5G35360.1	acetyl Co-enzyme a carboxylase biotin carboxylase subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	71267856	71277121	+
GWHAAZE00000006	mRNA	71267856	71277121	+
GWHAAZE00000006	exon	71267856	71268172	+
GWHAAZE00000006	exon	71268978	71269119	+
GWHAAZE00000006	exon	71270195	71270293	+
GWHAAZE00000006	exon	71270403	71270459	+
GWHAAZE00000006	exon	71270705	71270776	+
GWHAAZE00000006	exon	71271821	71271910	+
GWHAAZE00000006	exon	71272821	71272880	+
GWHAAZE00000006	exon	71273766	71273951	+
GWHAAZE00000006	exon	71274066	71274158	+
GWHAAZE00000006	exon	71274231	71274315	+
GWHAAZE00000006	exon	71274969	71275075	+
GWHAAZE00000006	exon	71275411	71275486	+
GWHAAZE00000006	exon	71275555	71275593	+
GWHAAZE00000006	exon	71276274	71276320	+
GWHAAZE00000006	exon	71276433	71276495	+
GWHAAZE00000006	exon	71276805	71277121	+
GWHAAZE00000006	CDS	71267856	71268172	+
GWHAAZE00000006	CDS	71268978	71269119	+
GWHAAZE00000006	CDS	71270195	71270293	+
GWHAAZE00000006	CDS	71270403	71270459	+
GWHAAZE00000006	CDS	71270705	71270776	+
GWHAAZE00000006	CDS	71271821	71271910	+
GWHAAZE00000006	CDS	71272821	71272880	+
GWHAAZE00000006	CDS	71273766	71273951	+
GWHAAZE00000006	CDS	71274066	71274158	+
GWHAAZE00000006	CDS	71274231	71274315	+
GWHAAZE00000006	CDS	71274969	71275075	+
GWHAAZE00000006	CDS	71275411	71275486	+
GWHAAZE00000006	CDS	71275555	71275593	+
GWHAAZE00000006	CDS	71276274	71276320	+
GWHAAZE00000006	CDS	71276433	71276495	+
GWHAAZE00000006	CDS	71276805	71276840	+
GWHAAZE00000006	three_prime_UTR	71276841	71277121	+

Transcript Sequence
>GWHTAAZE022396 ATGGGAAGAGCTAGCAGTATTAGGAGTTCCCAATGCAGCTTTATGGTGGGAAGTAAGGTACACTTTCCTTGGCAAAGAGCTCAGGCTTTTCAAGTTAGTCTTAAATCTGGGAAACGTGGGGGAGCTCTCGGTGTTGTATGTCGTGCTGAAAAGATTCTTGTGGCAAACAGAGGAGAAATTGCTGTTCGTGTGATTCGAACTGCTCATGAGATGGGTATCCCTTGCGTTGCAGTTTACTCGACGATAGATAAAGATGCACTTCATGTGAAACTGGCTGATGAGTCAGTTTGTATAGGTGAAGCCCCGAGTAATCAATCGTACTTAGTGGTGGCAAATGTGCTATCTGCTGCGATCAGCCGTGGATGTACAATGCTGCACCCTGGATATGGTTTCCTTGCTGAGAATGCAAATTTTGTTGACATGTGCAGAGAGCATAGTATCAACTTCATTGGGCCAAATCCAGGCAGCATACGTGTCATGGGTGACAAAGCAACTGCCAGGGAGACGATGAAGAAAGCTGGTGTTCCAACTGTACCAGGAAGTGACGGGTTGTTACAGAGCACTGAAGAAGCTATCAGGCTTGCCGATGGGATTGGCTTTCCTGTGATGATCAAGGCGACAGCTGGTGGTGGTGGACGTGGAATGCGTCTTGCTAAAGAGCCAGAAGAATTTGTGAAGCTATTACAGCAAGCTAAGAGTGAGGCAGGAGCTGCATTTGGAAATGATGGTTGCTATCTGGAAAAATATATTCAGAATCCAAGGCACATTGAGTTCCAGGTTCTTGCAGATAAGTTTGGTAACGTTGTTCACTTTGGAGAGCGTGACTGCAGTATTCAGAGAAGGAACCAGAAGCTGCTGGAAGAAGCACCGTCCCCCGCATTGACCCCAGAGCTGCGGAAAGCTATGGGTGATGCAGCTGTTGCAGCAGCAGCATCTATAGGTTACATTGGTGTTGGTACTGTTGAGTTCCTTTTGGATGAAAGAGGGTCCTTTTACTTTATGGAAATGAACACTAGGATCCAGGTAGAGCATCCTGTGACAGAAATGATATCCTCAGTTGATCTGATTGAAGAGCAAATCCGTGTAGCTATGGGAGAGAAACTCCGGTACAAGCAGGAAGATATAGTGCTTAGAGGACATTCGATTGAATGCCGATTAATGCAGAAGATGCTTTCAAAAACTTCAGACCTGGGCCAGGTATGGAGAATAACAGCTTACTTGCCATCTGGAGGTCCATTTGTGAGAATGGATAGCCATATCTACGCTGATTATGTGGTTCCACCTAGCTATGATTCCCTACTTGGAAAGCTTATTGTTTGGGCTCCGACAAGAGAAAGGGCAATTGAACGCATGAAAAGGGCTCTTGGTGACACTATCATTACAGTTGATAGGGAGGCAAGAGTGCAAGACATTCCTACCTTTGGGGTTCCAACGACAATCGAATACCATAAGCTTATCCTCGAGATTGAGGACTTCAAAAATGGAAAAGTTGACACTGCTTTTATTCCAAAGCATGAGGAGGAATTAGCTGAGCCCCAGAAACTGGCACTTGTGGAGGCAGCAGCCTAGATGGACATCTTCTTTATTAATTTGAGCTCCTTTTTAGTGGGTTGGTCTCATTTTGGCCACAGTTTTCAGCATGCAATGTTCTAGCTTCCATCCCTCTTCACATTTTCTCCTTCAATGTGTCAAATTTCATAAGAAGGAATAAGGCCATTTAAATTTTCACCCTCAAATGAGGTTAGTGGTAGGATATGTGGATCACAGATAATCTTGTAAGTGCTTGGATGACAGTATGGAATTAATATAATCTGTTTATGAGAAGTCAAGACCATTGGTGGATTCATAAA

Network for GWHGAAZE022366

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00289.23	Biotin_carb_N	50	156	1.10E-39
PF02786.18	CPSase_L_D2	162	369	6.90E-82
PF02785.20	Biotin_carb_C	402	502	1.70E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01961	accC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Fatty acid metabolism	map01212
		Pyruvate metabolism	map00620
		Propanoate metabolism	map00640
		Carbon fixation pathways in prokaryotes	map00720
		Fatty acid biosynthesis	map00061

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding
GO:0046872	molecular_function	metal ion binding
GO:0016874	molecular_function	ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	51.309
	SRR3591706	second leaf	44.402
	SRR3591707	mature leaf	12.807
	SRR3591708	Shoot apex	50.869
	SRR3591709	Stem	21.400
	SRR3591710	White floral bud	63.913
	SRR3591711	White flower	52.300
	SRR3591712	Green floral bud	66.870
	SRR3591713	Yellow flower	42.876
SRP173429	SRR8316895	Juvenile bud stage	26.901
	SRR8316896	Juvenile bud stage	45.307
	SRR8316897	Juvenile bud stage	22.508
	SRR8316894	Third green stage	18.548
	SRR8316900	Third green stage	73.156
	SRR8316901	Third green stage	60.644
	SRR8316898	Complete white stage	23.714
	SRR8316899	Complete white stage	49.187
	SRR8316903	Complete white stage	32.448
	SRR8316902	Silver flowering stage	19.649
	SRR8316904	Silver flowering stage	24.339
	SRR8316905	Silver flowering stage	16.385
	SRR8316906	Gold flowering stage	44.332
	SRR8316907	Gold flowering stage	39.860
	SRR8316908	Gold flowering stage	46.706
SRP132670	SRR6706286	Control	46.204
	SRR6706287	Light intensity 50%	51.556
	SRR6706288	Light intensity 20%	59.345
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.798
	CNS0095593	Slightly white alabastrum(diploid) 2	41.912
	CNS0095594	Slightly white alabastrum(diploid) 3	38.229
	CNS0095595	Whole white alabastrum(diploid) 2	37.981
	CNS0095596	Whole white alabastrum(diploid) 3	40.093
	CNS0095597	Whole white alabastrum(diploid) 4	32.914
	CNS0095598	Silvery flower (diploied) 1	23.671
	CNS0095599	Silvery flower (diploied) 2	26.769
	CNS0095600	Silvery flower (diploied) 3	53.713
	CNS0095601	Golden flower (diploid) 1	21.033
	CNS0095602	Golden flower (diploid) 2	36.011
	CNS0095603	Golden flower (diploid) 3	34.700
	CNS0095604	Slightly white alabastrum(tetraploid) 1	55.418
	CNS0095605	Slightly white alabastrum(tetraploid) 2	49.855
	CNS0095606	Slightly white alabastrum(tetraploid) 3	80.098
	CNS0095607	Whole white alabastrum(tetraploid) 1	34.245
	CNS0095608	Whole white alabastrum(tetraploid) 2	35.983
	CNS0095609	Whole white alabastrum(tetraploid) 3	83.812
	CNS0095610	Silvery flower (diploied) 1	52.440
	CNS0095611	Silvery flower (diploied) 2	69.069
	CNS0095612	Silvery flower (diploied) 3	65.189
	CNS0095613	Golden flower (tetraploid) 1	24.116
	CNS0095614	Golden flower (tetraploid) 2	40.496
	CNS0095615	Golden flower (tetraploid) 3	29.119
CRA001975	CRR073297	Stem 1	52.006
	CRR073298	Stem 2	56.319
	CRR073299	Stem 3	48.244
	CRR073300	Leaf 1	81.865
	CRR073301	Leaf 2	70.489
	CRR073302	Leaf 3	75.153
	CRR073303	Juvenile bud 1	73.655
	CRR073304	Juvenile bud 2	64.072
	CRR073305	Juvenile bud 3	73.490
	CRR073306	Third green 1	52.559
	CRR073307	Third green 2	36.001
	CRR073308	Third green 3	44.087
	CRR073309	Second white 1	38.016
	CRR073310	Second white 2	30.609
	CRR073311	Second white 3	30.912
	CRR073312	Silver flowering 1	35.337
	CRR073313	Silver flowering 2	36.827
	CRR073314	Silver flowering 3	30.682
	CRR073315	Gold flowering 1	13.470
	CRR073316	Gold flowering 2	17.302
	CRR073317	Gold flowering 3	14.409
	CRR073318	Tawny withering 1	38.234
	CRR073319	Tawny withering 2	21.534
	CRR073320	Tawny withering 3	39.467