Detail information of GWHGAAZE022367


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP18453.18.5692E-128unnamed protein product [Coffea canephora]
Swissprottr|Q8S9H7|DIV_ANTMA7E-37Transcription factor DIVARICATA
trEMBLtr|A0A068VFI4|A0A068VFI4_COFCA3E-128Coffea canephora DH200=94 genomic scaffold, scaffold_237 {ECO:0000313|EMBL:CDP18453.1}
TAIR10AT5G08520.11E-53Duplicated homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene7128397771286531+
GWHAAZE00000006mRNA7128397771286531+
GWHAAZE00000006exon7128397771284368+
GWHAAZE00000006exon7128610571286531+
GWHAAZE00000006CDS7128397771284368+
GWHAAZE00000006CDS7128610571286531+
Transcript Sequence

Network for GWHGAAZE022367

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyMYB-related

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.431
SRR3591706second leaf1.669
SRR3591707mature leaf1.526
SRR3591708Shoot apex2.414
SRR3591709Stem3.222
SRR3591710White floral bud2.496
SRR3591711White flower1.129
SRR3591712Green floral bud1.983
SRR3591713Yellow flower0.941
SRP173429 SRR8316895Juvenile bud stage 3.590
SRR8316896Juvenile bud stage 5.583
SRR8316897Juvenile bud stage 0.502
SRR8316894Third green stage 1.844
SRR8316900Third green stage 5.173
SRR8316901Third green stage 4.450
SRR8316898Complete white stage 2.133
SRR8316899Complete white stage 7.238
SRR8316903Complete white stage 4.310
SRR8316902Silver flowering stage0.919
SRR8316904Silver flowering stage1.805
SRR8316905Silver flowering stage0.690
SRR8316906Gold flowering stage 1.178
SRR8316907Gold flowering stage 2.726
SRR8316908Gold flowering stage 1.024
SRP132670SRR6706286Control3.075
SRR6706287Light intensity 50%3.822
SRR6706288Light intensity 20%3.721
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.131
CNS0095593Slightly white alabastrum(diploid) 23.409
CNS0095594Slightly white alabastrum(diploid) 34.055
CNS0095595Whole white alabastrum(diploid) 24.017
CNS0095596Whole white alabastrum(diploid) 34.022
CNS0095597Whole white alabastrum(diploid) 42.857
CNS0095598Silvery flower (diploied) 15.139
CNS0095599Silvery flower (diploied) 22.987
CNS0095600Silvery flower (diploied) 32.545
CNS0095601Golden flower (diploid) 13.187
CNS0095602Golden flower (diploid) 25.240
CNS0095603Golden flower (diploid) 34.592
CNS0095604Slightly white alabastrum(tetraploid) 11.386
CNS0095605Slightly white alabastrum(tetraploid) 20.904
CNS0095606Slightly white alabastrum(tetraploid) 32.171
CNS0095607Whole white alabastrum(tetraploid) 10.382
CNS0095608Whole white alabastrum(tetraploid) 20.461
CNS0095609Whole white alabastrum(tetraploid) 31.108
CNS0095610Silvery flower (diploied) 10.737
CNS0095611Silvery flower (diploied) 20.716
CNS0095612Silvery flower (diploied) 30.967
CNS0095613Golden flower (tetraploid) 10.204
CNS0095614Golden flower (tetraploid) 20.270
CNS0095615Golden flower (tetraploid) 30.438
CRA001975CRR073297Stem 114.101
CRR073298Stem 214.020
CRR073299Stem 310.696
CRR073300Leaf 19.608
CRR073301Leaf 29.726
CRR073302Leaf 310.673
CRR073303Juvenile bud 19.225
CRR073304Juvenile bud 28.015
CRR073305Juvenile bud 311.244
CRR073306Third green 13.505
CRR073307Third green 24.041
CRR073308Third green 35.436
CRR073309Second white 14.454
CRR073310Second white 23.083
CRR073311Second white 30.363
CRR073312Silver flowering 10.869
CRR073313Silver flowering 21.648
CRR073314Silver flowering 31.461
CRR073315Gold flowering 112.167
CRR073316Gold flowering 211.869
CRR073317Gold flowering 311.577
CRR073318Tawny withering 111.079
CRR073319Tawny withering 27.910
CRR073320Tawny withering 39.827