Gene detail

Detail information of GWHGAAZE022417

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010112301.1	0	Delta(24)-sterol reductase [Morus notabilis]
COG	YP_004919129.1	2E-104	lipid biosynthetic enzyme, related to human 24-dehydrocholesterol reductase DHCR
Swissprot	tr\|P93472\|DIM_PEA	0	Delta(24)-sterol reductase
trEMBL	tr\|W9SYN1\|W9SYN1_9ROSA	0	Delta(24)-sterol reductase {ECO:0000313\|EMBL:EXC33104.1}
TAIR10	AT3G19820.3	0	cell elongation protein / DWARF1 / DIMINUTO (DIM)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	72223043	72225214	+
GWHAAZE00000006	mRNA	72223043	72225214	+
GWHAAZE00000006	exon	72223043	72224317	+
GWHAAZE00000006	exon	72224759	72225214	+
GWHAAZE00000006	CDS	72223043	72224317	+
GWHAAZE00000006	CDS	72224759	72225214	+

Transcript Sequence
>GWHTAAZE022447 GCATCTTCGTCCCCCACAATGTCAGATCTTGAGGCCCCACTACGCCCCAAGGGCCAGAAGAGGAAGAAGGTCTGGGTGGATTATTTTGTCAACTTCCGTTGGATCATTGTTATCTTTGTGGTCCTTCCTATCTCCTTCACGCTATACTTCCTCACTTATCTTGGGGATGTCAAATCTGAACGCAAGTCCTTCAAGCAGCGTCAGAAGGAACACGATGAAAATGTCAAGAAAGTTGTGAAACGCCTCAAGGAGAGGAACCCGTCAAAAGATGGCCTTGTCTGCACAGCCCGAAAACCCTGGATTGCCGTTGGAATGCGAAACGTGGACTATAAGCGCGCTCGCCATTTTGAGGTTGACCTTTCTGCTTTCAGAAACATACTTGAAATTGATCAAGATAGAATGGTAGCTAGAGTGGAGCCCCTTGTCAATATGGGACAGATCACCAGGGTAACTGTCCCAATGAACCTCGCCCTTGCAGTTGTTGCTGAGCTTGATGACCTGACTGTTGGTGGCCTCATTAATGGCTATGGGATCGAAGGCAGCTCTCATATATACGGCCTCTTTTCTGATACTGTTGTGGCATATGAGATCGTTCTTGCAGATGGTCGGGTAGTTAGAGCTACTAAGGACAATGAGTATTCTGATCTTTTCTACGCTGTTCCATGGTCCCAAGGGACACTGGGGCTTCTCGTTTCTGCTGAGATCAAGCTTATACCCATCAAGGAATACATGAAGCTGACCTACAAACCTGTTAAAGGTAGTCTTAAAGATCTTGCACAGGGATATATTGATTCGTTTGCGCCCCGAGATGGAGATCAGGATAATCCTGAAAAGGTTCCTGACTTTGTAGAAACCATGGTTTACACTCGCCATGAAGCTGTTTGCATGAGTGGAAGATATGCTTCGAAGGAGGAGGCTAAGAAGAAGGGAAACGTGATTAACAGTGTTGGTTGGTGGTTTAAACCGTGGTTCTATCAGCACGCGCAGAAAGCACTGAAGAAAGGGGAGTTTGTGGAGTACATACCGACCAGGGAGTATTACCACAGGCACACTAGGTGTTTGTACTGGGAAGGGAAGCTTATCCTTCCATTTGCTGATCAATGCTGGTTCAGGTTCCTGCTGGGTTGGTTGATGCCTCCTAAGGTTTCTCTGCTCAAGGCTACCCAAGGTGAAGCCATCAGGAACTATTACCATGAGATGCATGTCATTCAGGATATGCTTGTTCCCCTTTACAAGGTTGGAGATGCGCTTGAGTGGGTTGACCGTGAGATGGAGGTATATCCTTTGTGGCTCTGCCCACACAGGCTGTACAAGCTTCCCTGCAAAACAATGGTGTACCCAGAACCAGGATTTGAGCTACAGCGCAGGCAGGGGGACACGCATTATGCCCAGATGTACACAGATGTGGGAGTCTACTATGCACCGGGACCTGTCCTGAGGGGAGAGGAATTTGACGGGGCAGGTGCAGTCCGTCGGATGGAGAACTGGTTGATTGAAAACCACGGGTTCCAGCCCCAGTATGCTGTGTCTGAACTAAATGAGAAGAGCTTCTGGAGGATGTTTGACGCCGAGCTTTACGAGCAGGCAAGGAAGAAGTATGGAGCAGTGGGAACGTTTATGAGTGTGTACTACAAGTCGAAGAAAGGGAGGAAGACAGAGAAGGAGGTGCAGGAAGCTGAGCAAGCGCATCTTGAGACTGCGTATGCTGAAGTTGACATGCCGGTGGATTGA

Network for GWHGAAZE022417

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01565.24	FAD_binding_4	118	207	3.90E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09828	DHCR24, DWF1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Steroid biosynthesis	map00100

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0050660	molecular_function	flavin adenine dinucleotide binding
GO:0071949	molecular_function	FAD binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	176.057
	SRR3591706	second leaf	55.197
	SRR3591707	mature leaf	17.519
	SRR3591708	Shoot apex	180.087
	SRR3591709	Stem	49.488
	SRR3591710	White floral bud	31.433
	SRR3591711	White flower	16.025
	SRR3591712	Green floral bud	80.133
	SRR3591713	Yellow flower	4.133
SRP173429	SRR8316895	Juvenile bud stage	64.925
	SRR8316896	Juvenile bud stage	78.764
	SRR8316897	Juvenile bud stage	28.800
	SRR8316894	Third green stage	30.039
	SRR8316900	Third green stage	85.442
	SRR8316901	Third green stage	78.641
	SRR8316898	Complete white stage	6.806
	SRR8316899	Complete white stage	78.273
	SRR8316903	Complete white stage	13.036
	SRR8316902	Silver flowering stage	2.468
	SRR8316904	Silver flowering stage	3.557
	SRR8316905	Silver flowering stage	1.216
	SRR8316906	Gold flowering stage	2.654
	SRR8316907	Gold flowering stage	1.943
	SRR8316908	Gold flowering stage	2.606
SRP132670	SRR6706286	Control	101.309
	SRR6706287	Light intensity 50%	112.796
	SRR6706288	Light intensity 20%	124.370
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	87.394
	CNS0095593	Slightly white alabastrum(diploid) 2	116.827
	CNS0095594	Slightly white alabastrum(diploid) 3	64.363
	CNS0095595	Whole white alabastrum(diploid) 2	73.492
	CNS0095596	Whole white alabastrum(diploid) 3	78.803
	CNS0095597	Whole white alabastrum(diploid) 4	66.963
	CNS0095598	Silvery flower (diploied) 1	47.125
	CNS0095599	Silvery flower (diploied) 2	72.168
	CNS0095600	Silvery flower (diploied) 3	22.014
	CNS0095601	Golden flower (diploid) 1	54.545
	CNS0095602	Golden flower (diploid) 2	28.418
	CNS0095603	Golden flower (diploid) 3	28.173
	CNS0095604	Slightly white alabastrum(tetraploid) 1	94.458
	CNS0095605	Slightly white alabastrum(tetraploid) 2	76.020
	CNS0095606	Slightly white alabastrum(tetraploid) 3	180.393
	CNS0095607	Whole white alabastrum(tetraploid) 1	45.734
	CNS0095608	Whole white alabastrum(tetraploid) 2	36.286
	CNS0095609	Whole white alabastrum(tetraploid) 3	95.549
	CNS0095610	Silvery flower (diploied) 1	10.250
	CNS0095611	Silvery flower (diploied) 2	18.372
	CNS0095612	Silvery flower (diploied) 3	7.232
	CNS0095613	Golden flower (tetraploid) 1	2.837
	CNS0095614	Golden flower (tetraploid) 2	6.554
	CNS0095615	Golden flower (tetraploid) 3	1.220
CRA001975	CRR073297	Stem 1	188.686
	CRR073298	Stem 2	190.713
	CRR073299	Stem 3	229.081
	CRR073300	Leaf 1	209.464
	CRR073301	Leaf 2	197.041
	CRR073302	Leaf 3	213.746
	CRR073303	Juvenile bud 1	208.133
	CRR073304	Juvenile bud 2	192.781
	CRR073305	Juvenile bud 3	233.329
	CRR073306	Third green 1	5.666
	CRR073307	Third green 2	4.792
	CRR073308	Third green 3	5.950
	CRR073309	Second white 1	3.093
	CRR073310	Second white 2	1.074
	CRR073311	Second white 3	0.556
	CRR073312	Silver flowering 1	0.711
	CRR073313	Silver flowering 2	1.310
	CRR073314	Silver flowering 3	0.808
	CRR073315	Gold flowering 1	19.700
	CRR073316	Gold flowering 2	26.592
	CRR073317	Gold flowering 3	33.003
	CRR073318	Tawny withering 1	135.000
	CRR073319	Tawny withering 2	100.467
	CRR073320	Tawny withering 3	128.650