Gene detail

Detail information of GWHGAAZE022438

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007045349.1	7.1483E-170	Lignin-forming anionic peroxidase [Theobroma cacao]
Swissprot	tr\|Q02200\|PERX_NICSY	2E-161	Lignin-forming anionic peroxidase (Precursor)
trEMBL	tr\|A0A061E8C7\|A0A061E8C7_THECC	3E-170	Lignin-forming anionic peroxidase {ECO:0000313\|EMBL:EOY01181.1}
TAIR10	AT1G14550.1	1E-120	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	72534031	72535548	-
GWHAAZE00000006	mRNA	72534031	72535548	-
GWHAAZE00000006	exon	72534031	72534425	-
GWHAAZE00000006	exon	72534520	72534685	-
GWHAAZE00000006	exon	72535042	72535233	-
GWHAAZE00000006	exon	72535330	72535548	-
GWHAAZE00000006	CDS	72535330	72535548	-
GWHAAZE00000006	CDS	72535042	72535233	-
GWHAAZE00000006	CDS	72534520	72534685	-
GWHAAZE00000006	CDS	72534031	72534425	-

Transcript Sequence
>GWHTAAZE022468 ATGGATTCTCACAATTCTTTATCAACCATCACGCTTGTCCTCTTTGTGCTTTTTCTTTCTAACACCCTATCCAATGCACAATTATCTTCTTCATTTTACGATGGAACATGCCCCAATGTGCTCGCCACCATTAGAACTTCTGTCAGACAATCTATTTCACGTGAAAGCCGAATGGCAGCATCCCTCATTCGCCTTCATTTTCACGACTGTTTCGTTCAGGGATGTGATGCATCAATCTTACTAGAAGACACCTCTTCTTTCACGGGTGAGCAGAACGCGCTTCCTAATAGGAATTCTGCAAGAGGTTACCAAGTCATAGAAGCCGCCAAATCCGCAGTGGAGAATGTATGCCCTGGTGTTGTTTCTTGTGCTGATGTACTTGCTGTTGCAGCTCGTGATGCCTCTGCTTATGTAGGTGGTCCATCATGGACAGTAAAATTGGGAAGAAGAGATTCCACAACTGCAAGCCAGAGTGAAGCGAATAGCGATCTTCCAAGATTTACAGATGATCTACCCACACTTATCTCAACTTTTGATCGCAAGGGTCTCAATGCAAGAGACATGGTTGCTTTGTCAGGGGCACACACATTGGGGCAAGCACAGTGCTTCACTTTCCGCGAGAGAATATACAGTAACGGAACAAACATTGATGCTGGTTTTGCTAGCACCCGTAGACGTCGTTGCCCTGCAGCTAATAATGATGGAGATAGCAATTTGGCACCACTCGATTTGGTGACACCAAATTCATTTGACAACAACTATTACAGGAATCTAATTCAAAGGAGGGGTCTTCTTCATTCGGACCAGGTACTATTTAGCGGGGGATCGACGAATAGTATTGTTTCAGAGTATAGCAGCAACCCTTCAAGATTTAGCAGTGATTTTGCTGCTGCAATGGTGAAAATGGGAGATATTAGGCCACTCACTGGTCAAGATGGGGTGATAAGAAGGATTTGCAGTGCCCTTAATTAA

Network for GWHGAAZE022438

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	45	287	1.70E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.611
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.768
	SRR3591710	White floral bud	0.171
	SRR3591711	White flower	0.151
	SRR3591712	Green floral bud	0.736
	SRR3591713	Yellow flower	0.896
SRP173429	SRR8316895	Juvenile bud stage	0.159
	SRR8316896	Juvenile bud stage	0.042
	SRR8316897	Juvenile bud stage	1.052
	SRR8316894	Third green stage	0.100
	SRR8316900	Third green stage	0.056
	SRR8316901	Third green stage	0.420
	SRR8316898	Complete white stage	0.464
	SRR8316899	Complete white stage	0.438
	SRR8316903	Complete white stage	0.596
	SRR8316902	Silver flowering stage	1.571
	SRR8316904	Silver flowering stage	1.120
	SRR8316905	Silver flowering stage	1.221
	SRR8316906	Gold flowering stage	12.650
	SRR8316907	Gold flowering stage	9.077
	SRR8316908	Gold flowering stage	12.722
SRP132670	SRR6706286	Control	0.379
	SRR6706287	Light intensity 50%	1.362
	SRR6706288	Light intensity 20%	0.515
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.109
	CNS0095593	Slightly white alabastrum(diploid) 2	0.582
	CNS0095594	Slightly white alabastrum(diploid) 3	0.657
	CNS0095595	Whole white alabastrum(diploid) 2	0.122
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.268
	CNS0095598	Silvery flower (diploied) 1	0.626
	CNS0095599	Silvery flower (diploied) 2	0.479
	CNS0095600	Silvery flower (diploied) 3	1.424
	CNS0095601	Golden flower (diploid) 1	1.176
	CNS0095602	Golden flower (diploid) 2	0.687
	CNS0095603	Golden flower (diploid) 3	0.659
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.054
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.199
	CNS0095611	Silvery flower (diploied) 2	0.002
	CNS0095612	Silvery flower (diploied) 3	0.386
	CNS0095613	Golden flower (tetraploid) 1	2.470
	CNS0095614	Golden flower (tetraploid) 2	2.764
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.273
	CRR073298	Stem 2	0.092
	CRR073299	Stem 3	0.018
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.020
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.130
	CRR073305	Juvenile bud 3	0.002
	CRR073306	Third green 1	0.039
	CRR073307	Third green 2	0.072
	CRR073308	Third green 3	0.173
	CRR073309	Second white 1	0.123
	CRR073310	Second white 2	0.719
	CRR073311	Second white 3	1.266
	CRR073312	Silver flowering 1	10.829
	CRR073313	Silver flowering 2	7.953
	CRR073314	Silver flowering 3	5.500
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.284
	CRR073317	Gold flowering 3	1.035
	CRR073318	Tawny withering 1	1.149
	CRR073319	Tawny withering 2	4.914
	CRR073320	Tawny withering 3	0.167