Gene detail

Detail information of GWHGAAZE022460

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007045415.1	1.9656E-147	NAD(P)-linked oxidoreductase superfamily protein, putative [Theobroma cacao]
COG	YP_007977361.1	4E-67	oxidoreductase, aldo/keto reductase family
Swissprot	tr\|O49133\|GALUR_FRAAN	1E-141	D-galacturonate reductase
trEMBL	tr\|A0A061EA55\|A0A061EA55_THECC	7E-148	NAD(P)-linked oxidoreductase superfamily protein, putative {ECO:0000313\|EMBL:EOY01247.1}
TAIR10	AT1G59960.1	9E-89	NAD(P)-linked oxidoreductase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	72954018	72955395	+
GWHAAZE00000006	mRNA	72954018	72955395	+
GWHAAZE00000006	exon	72954018	72954337	+
GWHAAZE00000006	exon	72954465	72954708	+
GWHAAZE00000006	exon	72954821	72955000	+
GWHAAZE00000006	exon	72955183	72955395	+
GWHAAZE00000006	CDS	72954018	72954337	+
GWHAAZE00000006	CDS	72954465	72954708	+
GWHAAZE00000006	CDS	72954821	72955000	+
GWHAAZE00000006	CDS	72955183	72955395	+

Transcript Sequence
>GWHTAAZE022490 ATGGCAGCTGCAACATTAGCCACACCAACAGTAACGTTAAGCTCGTCAAGTGCCATGCCGATGATCGCCATGGGGAGTGGATCAATAAAAGCCGACCCGGAAACCACCAAATCAACAATCATCCAAGCCATCAAAGTCGGCTACCGCCACTTTGACACCGCGGCCATATATGGGACAGAGCAGGCTCTTGGCCAAGCTATAGCCGAAGCTCTTAAGCTTGGTCTGATCCAATCTAGAGACGAGCTTTTCATTACTACCAAGTTGTGGTGCAATTGTGCTGAAGCTGATCTTGTTTTAGCAGCCATCAAGAAGAGTCTCCAGAATCTAGGATTGGAGTATGTAGATCTATACCTGATACATTGGCCATTAAGAATAAAGCAAGAGGAACTTAAGGTCCCGGTCCCAAAGGAATGCATTTTCCCAATTGAGATAAGGTCTGTTTGGAAAAGTATGGAGGAATGTCAAAATCTCGGCCTCACCAAAGCCATTGGCGTAAGCAATTTCTCTCCAAAGAGGCTCAACGAAATCCTTTCCTTCGCCAAAATCCCTCCGGCTGTTAATCAGGTGGAGATGAACCCGGTTTGGCAGCATAAAGAGCTGAGGGATTTTTGTAAGGCAAACAACATACAACTAAGTGCTTACTCTCCTTTGGGAGCGCCAGGTACTGCCTGGGGTGACAACCGAGTAATGGGTTGCTCTATACTCCAAGACATTGCCAAGTCGAAAGGCAAAACTACTGCACAGATTTCTTTGAGATGGATACATGAGCAAGGAGTGACTACCATAACGCACAGCTACAACAAGGGGAGGATGCAAGAGAATCTGGGTATCTTTGACTGGTCGTTGACTGAGGAAGAGTGTAATAAGATTGCTCAGATTCCTCAGCGCAAAAGTATCTATCTTAGCTCTATGTCAGAGCCCAATGACATACTCGCTGAAATAGATGCAGAGATATGA

Network for GWHGAAZE022460

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00248.22	Aldo_ket_red	30	293	2.60E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19642	GALUR	Ascorbate and aldarate metabolism	map00053

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.005
	SRR3591706	second leaf	0.921
	SRR3591707	mature leaf	3.896
	SRR3591708	Shoot apex	1.936
	SRR3591709	Stem	2.113
	SRR3591710	White floral bud	2.245
	SRR3591711	White flower	5.562
	SRR3591712	Green floral bud	2.157
	SRR3591713	Yellow flower	0.167
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.615
	SRR8316897	Juvenile bud stage	0.161
	SRR8316894	Third green stage	0.065
	SRR8316900	Third green stage	0.034
	SRR8316901	Third green stage	0.129
	SRR8316898	Complete white stage	0.652
	SRR8316899	Complete white stage	0.085
	SRR8316903	Complete white stage	0.701
	SRR8316902	Silver flowering stage	0.544
	SRR8316904	Silver flowering stage	0.954
	SRR8316905	Silver flowering stage	0.739
	SRR8316906	Gold flowering stage	2.803
	SRR8316907	Gold flowering stage	1.628
	SRR8316908	Gold flowering stage	17.575
SRP132670	SRR6706286	Control	1.423
	SRR6706287	Light intensity 50%	0.283
	SRR6706288	Light intensity 20%	0.159
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.137
	CNS0095593	Slightly white alabastrum(diploid) 2	0.368
	CNS0095594	Slightly white alabastrum(diploid) 3	0.393
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.424
	CNS0095598	Silvery flower (diploied) 1	3.584
	CNS0095599	Silvery flower (diploied) 2	4.659
	CNS0095600	Silvery flower (diploied) 3	0.675
	CNS0095601	Golden flower (diploid) 1	2.794
	CNS0095602	Golden flower (diploid) 2	2.899
	CNS0095603	Golden flower (diploid) 3	3.035
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.073
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.006
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.345
	CNS0095610	Silvery flower (diploied) 1	0.510
	CNS0095611	Silvery flower (diploied) 2	0.145
	CNS0095612	Silvery flower (diploied) 3	0.462
	CNS0095613	Golden flower (tetraploid) 1	2.059
	CNS0095614	Golden flower (tetraploid) 2	2.647
	CNS0095615	Golden flower (tetraploid) 3	0.422
CRA001975	CRR073297	Stem 1	0.060
	CRR073298	Stem 2	0.082
	CRR073299	Stem 3	0.002
	CRR073300	Leaf 1	0.051
	CRR073301	Leaf 2	0.135
	CRR073302	Leaf 3	0.134
	CRR073303	Juvenile bud 1	0.181
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.500
	CRR073306	Third green 1	0.085
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.097
	CRR073309	Second white 1	0.989
	CRR073310	Second white 2	0.469
	CRR073311	Second white 3	0.089
	CRR073312	Silver flowering 1	3.671
	CRR073313	Silver flowering 2	2.411
	CRR073314	Silver flowering 3	4.775
	CRR073315	Gold flowering 1	10.638
	CRR073316	Gold flowering 2	15.843
	CRR073317	Gold flowering 3	13.418
	CRR073318	Tawny withering 1	75.481
	CRR073319	Tawny withering 2	69.951
	CRR073320	Tawny withering 3	12.403