Gene detail

Detail information of GWHGAAZE022462

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007045415.1	1.8211E-150	NAD(P)-linked oxidoreductase superfamily protein, putative [Theobroma cacao]
COG	YP_007977361.1	1E-56	oxidoreductase, aldo/keto reductase family
Swissprot	tr\|O49133\|GALUR_FRAAN	4E-139	D-galacturonate reductase
trEMBL	tr\|A0A061EA55\|A0A061EA55_THECC	7E-151	NAD(P)-linked oxidoreductase superfamily protein, putative {ECO:0000313\|EMBL:EOY01247.1}
TAIR10	AT1G59960.1	2E-84	NAD(P)-linked oxidoreductase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	72985699	72988674	+
GWHAAZE00000006	mRNA	72985699	72988674	+
GWHAAZE00000006	exon	72985699	72986018	+
GWHAAZE00000006	exon	72987750	72987984	+
GWHAAZE00000006	exon	72988084	72988263	+
GWHAAZE00000006	exon	72988462	72988674	+
GWHAAZE00000006	CDS	72985699	72986018	+
GWHAAZE00000006	CDS	72987750	72987984	+
GWHAAZE00000006	CDS	72988084	72988263	+
GWHAAZE00000006	CDS	72988462	72988674	+

Transcript Sequence
>GWHTAAZE022492 ATGGTAGCAACATTGACCATTCCAACAGTAACATTAAGCTCCTTGGCAGGAGCCATGCCGACTATTGCCATGGGCACTGCAAGCGCACCGGATGCCACAGACGCCACCAAATTAGCCTTCATAGAAGCAATTAAGGCCGGCTACCGCCACTTTGACACGGCTGCTCTTTACGGGACTGAGCCAGCTATTGGCCAAGCTATAGCTGAAGCTCTTAAGCTCGGTCTTGTCCAATCTAGAGACGAACTCTTCATCACTACCAAGTTGTGGTGCAACTGTGCTCAAGCTGATCTTATTTTACCCGCCATCAACAAGAGTCTCCGGAATTTAGGATTGGTATATGTGGATCTATATCTGGTACATTGGCCATTAAAGCTAAAGCAAGAGGTATTTGAGGTCCCAATCCCAAAGGAATGCATTTTCCCAATTGATATAAGGTCTGTTTGGGAAAGCATGGAGGAATGTCAAAATCTCGGCCTCACCAAAGCCATTGGTGTTAGTAATTTCTCTCCAAAGAAGCTTGACGAAATCCTTTCCTTCGCTAAGATTCCTCCGGCTGTGGAGATGAACCCAGTTTGGCAGCATAAAGAGTTGAGGGATTATTGCAAGGCAAAGAACATACATCTAAGTGCTTGGTCTCCCTTGGGCGCTGTGGGCAATAGCTGGGGTGATAATCGAGTGATGGGCTGTTCTACACTCGAAGACATTGCCAAGTCTAAAGGCAAAACTACTGCCCAGATTGCACTGAGATGGTTACATGAGCAAGGGGTGACTGTTATAGTAAAAAGCTACAACAAGGTGAGGATGAAGGAGAACCTGGGTATCTTTGACTGGTCGTTGACCGAGGAAGAATGTAATAAGATTGCGCAGATTCCTCAGCGCAAAGGCTTCTATTTTGGTTCTATTGCAGAGCCGCATGATGTTATCGCTGAAATAGATGCCGAGATATGA

Network for GWHGAAZE022462

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00248.22	Aldo_ket_red	24	290	1.70E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19642	GALUR	Ascorbate and aldarate metabolism	map00053

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.871
	SRR3591706	second leaf	25.206
	SRR3591707	mature leaf	80.440
	SRR3591708	Shoot apex	15.377
	SRR3591709	Stem	22.775
	SRR3591710	White floral bud	5.474
	SRR3591711	White flower	11.244
	SRR3591712	Green floral bud	1.328
	SRR3591713	Yellow flower	20.892
SRP173429	SRR8316895	Juvenile bud stage	1.201
	SRR8316896	Juvenile bud stage	1.293
	SRR8316897	Juvenile bud stage	1.781
	SRR8316894	Third green stage	0.769
	SRR8316900	Third green stage	1.186
	SRR8316901	Third green stage	1.601
	SRR8316898	Complete white stage	1.919
	SRR8316899	Complete white stage	1.362
	SRR8316903	Complete white stage	3.950
	SRR8316902	Silver flowering stage	1.873
	SRR8316904	Silver flowering stage	1.856
	SRR8316905	Silver flowering stage	0.684
	SRR8316906	Gold flowering stage	5.265
	SRR8316907	Gold flowering stage	5.539
	SRR8316908	Gold flowering stage	5.212
SRP132670	SRR6706286	Control	2.392
	SRR6706287	Light intensity 50%	1.410
	SRR6706288	Light intensity 20%	0.997
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.115
	CNS0095593	Slightly white alabastrum(diploid) 2	2.312
	CNS0095594	Slightly white alabastrum(diploid) 3	1.162
	CNS0095595	Whole white alabastrum(diploid) 2	0.665
	CNS0095596	Whole white alabastrum(diploid) 3	1.255
	CNS0095597	Whole white alabastrum(diploid) 4	1.429
	CNS0095598	Silvery flower (diploied) 1	15.345
	CNS0095599	Silvery flower (diploied) 2	11.166
	CNS0095600	Silvery flower (diploied) 3	2.363
	CNS0095601	Golden flower (diploid) 1	14.505
	CNS0095602	Golden flower (diploid) 2	10.391
	CNS0095603	Golden flower (diploid) 3	9.916
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.643
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.121
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.016
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.821
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.835
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.239
	CNS0095610	Silvery flower (diploied) 1	1.789
	CNS0095611	Silvery flower (diploied) 2	5.918
	CNS0095612	Silvery flower (diploied) 3	4.058
	CNS0095613	Golden flower (tetraploid) 1	32.528
	CNS0095614	Golden flower (tetraploid) 2	6.267
	CNS0095615	Golden flower (tetraploid) 3	16.933
CRA001975	CRR073297	Stem 1	3.613
	CRR073298	Stem 2	2.068
	CRR073299	Stem 3	4.325
	CRR073300	Leaf 1	0.437
	CRR073301	Leaf 2	0.941
	CRR073302	Leaf 3	0.381
	CRR073303	Juvenile bud 1	0.169
	CRR073304	Juvenile bud 2	0.268
	CRR073305	Juvenile bud 3	0.569
	CRR073306	Third green 1	0.711
	CRR073307	Third green 2	1.294
	CRR073308	Third green 3	3.881
	CRR073309	Second white 1	6.938
	CRR073310	Second white 2	5.992
	CRR073311	Second white 3	10.689
	CRR073312	Silver flowering 1	22.707
	CRR073313	Silver flowering 2	9.807
	CRR073314	Silver flowering 3	10.038
	CRR073315	Gold flowering 1	36.842
	CRR073316	Gold flowering 2	41.293
	CRR073317	Gold flowering 3	30.180
	CRR073318	Tawny withering 1	1.769
	CRR073319	Tawny withering 2	4.284
	CRR073320	Tawny withering 3	3.384