Gene detail

Detail information of GWHGAAZE022465

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP05464.1	0	unnamed protein product [Coffea canephora]
COG	YP_004775215.1	1E-42	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9ZPS9\|BRL2_ARATH	0	Serine/threonine-protein kinase BRI1-like 2 (Precursor)
trEMBL	tr\|A0A068UB84\|A0A068UB84_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_16 {ECO:0000313\|EMBL:CDP05464.1}
TAIR10	AT2G01950.1	0	BRI1-like 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	73031267	73034353	+
GWHAAZE00000006	mRNA	73031267	73034353	+
GWHAAZE00000006	exon	73031267	73033223	+
GWHAAZE00000006	exon	73033254	73034353	+
GWHAAZE00000006	CDS	73031267	73033223	+
GWHAAZE00000006	CDS	73033254	73034353	+

Transcript Sequence
>GWHTAAZE022495 ATGTTAACCGTCCTCAACTTGTCTTCCAATTCGTTTACTGTAAATTCAACTTCCTTGCTTCAACTCCCATTCGGATTGAAACAGCTTGAATTATCTTCCACAGGACTTGCAGGTCTAGTTCCTGAGAATTTTTTGACCAAGTGCCCCAATCTTGTTTATGTCAACCTTTCTTTCAACAATCTAACAGGTTTTCTACCCGAAAATCTTTTGAATTCCGATACACTGCAGGTTCTTGATCTCTCTTCCAATAACATAACAGGCTCTATTTCGAGTATGAAAATTGAGACCTGTAATTCCTTGTTGCATCTCGACTTGTCTGAAAACCATATATTTGATTCCATTCCTTTCTCCCTTTCAAATTGCACGAAGCTCAAAAGTTTGAATTTATCGTACAATTTACTCACCGGTAACATACCTCAATCTTTTGGCCAACTCAGTAGTTTACAAAGATTTGATCTTTCTCAGAATCATCTCGATGGTTGGATCCCCTCCGAGTTGGCTAATGCCTGTGGATCTTTCTTAGAACTTAAGCTATCAAATAACAACATTTCTGGCACAATCCCCGCCTCCTTCTCCTCGTGCACTTGGCTACAAGTTCTTGATTTGGCCAACAACAAAATTGCAGGTCCTTTAGATAATTTGGTCCTTAAGAACTTGGGTTCACTAGAAAGATTGCTATTGAACAATAACAAGATAAACGGACCATTTCCAGCTTCCATTTCAGCCTGCACGAAGTTGCGGGTAGTGGATTTCAGCTCCAATATGCTTTCTGGAATAATCCCACCAGATTTATGCCCAGGCGCAGCTTCACTTGAAGAGCTGAGAATCCCGGATAATTCTATAACTGGACAAATCCCAGCTGAATTGTCCCAGTGTTCGAAGCTAAAGACAATTGATCTCAGCTTGAACTATCTCAACGGTTCAATCCCACCTGAAATCGGGAATCTTGAAAATCTCGAGCAATTAATTGCTTGGTACAATGGCTTGAACGGAAATATACCAGCAGAGTTGGGGAAATGCAAGAATCTGAAGGATCTTATTCTCAACAATAACTACATAACTGGTGAAATCCCAATCCAATTGTTCAACTGCAGCAATCTTGAATGGATATCCCTCACAAACAATGGGCTCACAGGTGAGATACCAAGGGAATTTGGCCAATTGACAAGGCTGGCTGTTCTGCAACTCGGGAATAATAGCTTGGCTGGCCAGATTCCAACTGAACTAGGGAATTGTAGCAGCTTGGTTTGGCTCGATTTGAACAGCAACCAGCTAACGGGGGAGATCCCACCTCGGCTTGGACGGCAACTTGGAGCAAAAGCATTGAGCGGAATTCTTTCAGGCAACACTTTAGTGTTTGTTAGGAACGTGGGGAACTCATGTAAAGGAGTTGGAGGCTTGCTAGAATTTTCGGGGATCCGGCCTGAAAGGCTGTTACAAGACCCGTCACTGAAAACTTGCGACTTCACTAGAATGTATTCTGGTGCAGTGCTTAGCCTCTTCACACAGTATCAGACTCTTGAATATCTTGATCTTTCTTACAATGAGCTTCGAGGGAAAATACCGGATGAATTTGGGGAAATGGTGGCTTTGCAAGTTCTTGTATTAGCACATAACCAGTTATCGGGAGAGATTCCGTCATCACTTGGCCAGCTCAAGAATTTAGGCGTATTTGACGCATCACATAACAGATTGCAGGGGCACATTCCGGACTCTTTCTCAAATCTTTCTTTCTTGGTGCAAATTGATCTGTCGAACAATGAATTAACAGGGGAAATTCCACCGAGGGGGCAACTTAGTACACTTCCTGCAAGCCAATATGCTAATAATCCTGGGCTCTGCGGGGTTCCACTGGCTGACTGTCAGAGTTACAGTAACCAACCGGCAACTAATCCAAATGGTGATGGTGGAAGAGGAGGTCACAGAACTTCAGTTGCATCGTTGGCGAATAGCATTGTTTGCATTTTGGCCGTGTGGGCAATTGCAATGCGCGCAAGAAAAAAGGAGGTAGAGGAAGTGAAGATGCTTAAGAGATTGCAAGCATCCCATGCAGCCACAACATGGAAGATTGACAAGGAGAAAGAGCCTTTGAGCATTAATGTTGCAACTTTTCAAAGAAACTTGAGAAAGCTCAAGTTCTCGCAATTGATTGAAGCTACTAACGGTTTCTCAGCAGATAGCCTTATCGGGTGTGGTGGATTTGGGGAAGTGTTCAAGGCAACACTCAAAGATGGATCAAGTGTTGCAATCAAGAAGCTTATTCGACTGAGCTGCCAAGGGGACCGAGAATTCATGGCAGAAATGGAAACATTGGGGAAGATCAACCACAGGAATCTCGTCCCACTATTGGGTTACTGCAAAATTGGAGAAGAGAGGCTACTCGTCTATGAGTTCATGGAATTCGGAAGCCTTGAAGAGATGCTCCATGGGAGAACAAGAACACGCGATACACGAATTCTAACATGGGAGGAAAGGAAAAAGATAGCAAGAGGCGCTGCAAAAGGACTCTGTTTCTTACACCACAACTGTATCCCACATATTATACACCGAGACATGAAGTCAAGCAACGTATTACTAGATCACGAAATGGAAGCTAGGGTTTCTGATTTCGGAATGGCAAGGCTCATAAGTGCACTCGACACACATCTCAGTGTAAGCACACTTGCGGGTACTCCAGGGTACGTCCCACCTGAGTACTACCAAAGCTTCCGCTGCACAGCCAAGGGTGACGTGTATTCGTTCGGTGTTGTCCTCTTGGAACTCTTAACCGGTAAACGGCCAACAGATAAAGAAGATTTTGGGGACACCAACTTAGTGGGGTGGGTGAAAATGAAGGTGAGAGAAGGCAAAGGAATGGAAGTAATAGACCCGGAATTGCTTTCAGTGACTAAAGGAACAGACGAAGCAGAAGCGGAAGAAGTGAAAGAAATGGTTAGGTATCTAGAGATTACACTACAGTGTGTCGATGACTTCCCCTCAAAAAGGCCTAATATGTTGCAGGCAGTAGCCATGTTGAGAGAGCTTATGCCAGGAAGTAACAATGGAAGCAGCGGTTAA

Network for GWHGAAZE022465

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13516.7	LRR_6	74	87	0.52
PF13855.7	LRR_8	100	158	4.90E-08
PF13855.7	LRR_8	175	232	1.70E-06
PF13855.7	LRR_8	365	425	3.60E-07
PF13855.7	LRR_8	500	541	3.10E-07
PF00069.26	Pkinase	725	936	5.00E-43

Protein Sequence

>GWHPAAZE022481
MLTVLNLSSNSFTVNSTSLLQLPFGLKQLELSSTGLAGLVPENFLTKCPNLVYVNLSFNNLTGFLPENLLNSDTLQVLDLSSNNITGSISSMKIETCNSLLHLDLSENHIFDSIPFSLSNCTKLKSLNLSYNLLTGNIPQSFGQLSSLQRFDLSQNHLDGWIPSELANACGSFLELKLSNNNISGTIPASFSSCTWLQVLDLANNKIAGPLDNLVLKNLGSLERLLLNNNKINGPFPASISACTKLRVVDFSSNMLSGIIPPDLCPGAASLEELRIPDNSITGQIPAELSQCSKLKTIDLSLNYLNGSIPPEIGNLENLEQLIAWYNGLNGNIPAELGKCKNLKDLILNNNYITGEIPIQLFNCSNLEWISLTNNGLTGEIPREFGQLTRLAVLQLGNNSLAGQIPTELGNCSSLVWLDLNSNQLTGEIPPRLGRQLGAKALSGILSGNTLVFVRNVGNSCKGVGGLLEFSGIRPERLLQDPSLKTCDFTRMYSGAVLSLFTQYQTLEYLDLSYNELRGKIPDEFGEMVALQVLVLAHNQLSGEIPSSLGQLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSNNELTGEIPPRGQLSTLPASQYANNPGLCGVPLADCQSYSNQPATNPNGDGGRGGHRTSVASLANSIVCILAVWAIAMRARKKEVEEVKMLKRLQASHAATTWKIDKEKEPLSINVATFQRNLRKLKFSQLIEATNGFSADSLIGCGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKINHRNLVPLLGYCKIGEERLLVYEFMEFGSLEEMLHGRTRTRDTRILTWEERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHEMEARVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVLLELLTGKRPTDKEDFGDTNLVGWVKMKVREGKGMEVIDPELLSVTKGTDEAEAEEVKEMVRYLEITLQCVDDFPSKRPNMLQAVAMLRELMPGSNNGSSG

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-Xb-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.178
	SRR3591706	second leaf	2.637
	SRR3591707	mature leaf	0.708
	SRR3591708	Shoot apex	4.888
	SRR3591709	Stem	10.231
	SRR3591710	White floral bud	1.229
	SRR3591711	White flower	0.641
	SRR3591712	Green floral bud	1.266
	SRR3591713	Yellow flower	0.068
SRP173429	SRR8316895	Juvenile bud stage	1.380
	SRR8316896	Juvenile bud stage	0.873
	SRR8316897	Juvenile bud stage	0.580
	SRR8316894	Third green stage	0.414
	SRR8316900	Third green stage	0.283
	SRR8316901	Third green stage	0.319
	SRR8316898	Complete white stage	0.082
	SRR8316899	Complete white stage	1.081
	SRR8316903	Complete white stage	0.545
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.022
	SRR8316905	Silver flowering stage	0.020
	SRR8316906	Gold flowering stage	0.053
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.400
	SRR6706287	Light intensity 50%	0.366
	SRR6706288	Light intensity 20%	0.245
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.573
	CNS0095593	Slightly white alabastrum(diploid) 2	0.843
	CNS0095594	Slightly white alabastrum(diploid) 3	1.011
	CNS0095595	Whole white alabastrum(diploid) 2	0.412
	CNS0095596	Whole white alabastrum(diploid) 3	0.228
	CNS0095597	Whole white alabastrum(diploid) 4	0.152
	CNS0095598	Silvery flower (diploied) 1	1.301
	CNS0095599	Silvery flower (diploied) 2	0.775
	CNS0095600	Silvery flower (diploied) 3	0.613
	CNS0095601	Golden flower (diploid) 1	0.677
	CNS0095602	Golden flower (diploid) 2	0.499
	CNS0095603	Golden flower (diploid) 3	0.536
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.789
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.992
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.370
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.965
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.075
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.315
	CNS0095610	Silvery flower (diploied) 1	0.102
	CNS0095611	Silvery flower (diploied) 2	1.048
	CNS0095612	Silvery flower (diploied) 3	0.171
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.039
	CNS0095615	Golden flower (tetraploid) 3	0.003
CRA001975	CRR073297	Stem 1	2.679
	CRR073298	Stem 2	2.206
	CRR073299	Stem 3	4.607
	CRR073300	Leaf 1	0.703
	CRR073301	Leaf 2	0.718
	CRR073302	Leaf 3	0.445
	CRR073303	Juvenile bud 1	0.867
	CRR073304	Juvenile bud 2	0.594
	CRR073305	Juvenile bud 3	0.848
	CRR073306	Third green 1	0.006
	CRR073307	Third green 2	0.037
	CRR073308	Third green 3	0.032
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.019
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.885
	CRR073316	Gold flowering 2	1.295
	CRR073317	Gold flowering 3	1.266
	CRR073318	Tawny withering 1	20.391
	CRR073319	Tawny withering 2	6.939
	CRR073320	Tawny withering 3	28.046