Gene detail

Detail information of GWHGAAZE022500

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008220922.1	0	PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Prunus mume]
COG	YP_006545085.1	3E-133	alpha,alpha-trehalose-phosphate synthase (UDP-forming)
Swissprot	tr\|Q94AH8\|TPS6_ARATH	0	Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6
trEMBL	tr\|W8Q024\|W8Q024_CAMSI	0	Trehalose-phosphate synthase 6 {ECO:0000313\|EMBL:AHL29280.1}
TAIR10	AT1G68020.2	0	UDP-Glycosyltransferase / trehalose-phosphatase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	73570229	73573463	+
GWHAAZE00000006	mRNA	73570229	73573463	+
GWHAAZE00000006	exon	73570229	73572237	+
GWHAAZE00000006	exon	73572353	73572626	+
GWHAAZE00000006	exon	73572772	73572822	+
GWHAAZE00000006	exon	73573176	73573463	+
GWHAAZE00000006	CDS	73570229	73572237	+
GWHAAZE00000006	CDS	73572353	73572626	+
GWHAAZE00000006	CDS	73572772	73572822	+
GWHAAZE00000006	CDS	73573176	73573463	+

Transcript Sequence
>GWHTAAZE022530 ATGGTGTCAAGATCATACTCAAACCTCTTTGAGCTTGCCTCCGGTGACTCTCCGGCGCCGTCTTTTGGCCGGATGAGCCGGAGAATTCCACGTATTATGACCGTTGCAGGCATAATGTCAAATCTTGACGATGACCCATCGGAGAGTGTTTGCTCCGACCCGTCATCGTCGACGTCGCAACATGACCGGTTAATAATTGTGGCCAACCAGCTGCCCATTCGGGTGCAGCGAAAAACTGATGGCAAGGGTTGGCTTTTCAATTGGGATGAGAATTCACTTCTCCTCCAGCTGAAAGATGGGTTAGGACAAGAAGATGATATTGAGGTTATTTATGTGGGTTGTCTCAAGGAAGAGATTCACCCAAATGAACAAGATGAAGTCTCTCAAATACTCCTTGAGACATTTAACTGTGTGCCCACTTTTTTACAATCTGATCTCTTTAGTAAGTACTACCATGGTTTTTGTAAGCAACAGTTGTGGCCATTGTTCCATTACATGTTGCCCCTTTCCCCTGATCTTGGCGGTAGGTTCAATCGGTCTCTTTGGCAGGCTTATGTGTCTGTTAATAAGATCTTCGCTGATAGGATTATGGAAGTGATTAACCCTGAAGATGATTTTGTTTGGATCCATGATTACCATCTCATGGTTTTACCCACTTTCCTGAGGAAGAGATTCAATAGAGTAAAGCTTGGGTTTTTCCTCCATAGTCCGTTCCCTTCATCGGAGATTTACAAGACTCTACCCATTAGGGAGGAGCTTCTTCGAGCACTGCTGAATTCCGATCTAATTGGCTTCCATACTTTTGATTATGCCCGCCATTTTCTCTCGTGTTGTAGCCGGATGCTCGGTCTGTCTTATGAATCTAAGCGGGGTTATATTGGTATAGAGTATTATGGTCGGACTGTGAGTATAAAGATTCTCCCGGTCGGTATCCATATGGCCCAGCTTGAATCGGTCTTGAGCCTTTCAGAGACCGAAGCAAAGGTCATTGAGCTCATCAAACAGTTTAAAGAGAAGGGTATGACAATGTTGCTTGGGGTTGATGACATGGACATATTTAAGGGCATTAGCTTGAAGTTGTTAGCGATGGAGCAGCTGCTTGTGCAGCATCCCGAGTGGCAAGGGAAGGTCGTGTTAGTTCAGATAGCAAATCCAGCGAGGGGAAAAGGGAAAGATGTGAAAGAAGTGCAGAATGAAACTAAGTCGACCGTGGAGCGAATCAATGGAATGTTTGGTACACCGGATTATACACCTGTTGTGTTCATTGATGAGCCATTGAAGTTCTATGAAAGAATTGCTTATTACGTTGTTGCTGAGTGTTGTTTGGTCACCGCTGTTAGGGATGGAATGAATCTCATTCCGTATGAATACATAATTAGCCGTCAAGGTAATGAGGCACTGGATAAGGTTTTGGGTTTGGAGCCAAACACTCAAAAGAAGAGCATGTTGGTTGTGTCTGAGTTTATTGGTTGTTCACCGTCTTTGAGTGGAGCGATTCGAGTCAACCCATGGAACATAGACGCGGTAGCAGACGCAATGGACTGTGCCTTGGAGATGGCTGAGCCGGAAAAGCAATTGCGGCACGAGAAGCATTATAGGTATGTGAGCACCCATGATGTCGGGTACTGGGCTCGTAGTTTCTTGCAAGATTTGGAGAGGACATGCAAGGATCATGTGCGGCGCAGGTGCTGGGGTATCGGGTTTGGGTTAAGTTTTCGGGTGGTTGCACTTGATCCGAATTTTAGGAAGCTGTCAATGGAGCATATTGTTTCGGCGTACAAAAGGACTACAACTAGGGCAATCCTTTTGGATTATGATGGTACTTTGATGCCTCAGGCTTCAATTGATAAGGGCCCAAGTTCTAAAACCATAGATATCCTGAACAAATTGTGCAAAAATAAGAACAATATGGTTTTCATTGTCAGTGCTAGAAGCCGGGCCACGCTAGGGGAGTGGTTTTCTTCTTGTGAGAAACTGGGCATGGCAGCTGAGCATGGCTGTTTCCTAAGGCTGAACCGAGATGTGGAATGGGAAACATGTGTGCCAATTGTGGAGTGTAGTTGGAAGCAGATTGCAGAACCAGTTATGAAGCTTTATACCGAGACAACTGATGGGTCAACGATCGAGGACAAGGAAACTGCAATGGTGTGGTGCTATGAAGATGCAGATCCTGATTTTGGATCTTGTCAAGCTAAGGAACTTCTTGACCATCTTGAAAGTGTGCTTGCCAATGAACCAGTTACCGTCAAAAGTGGGCAGAATATTGTGGAGGTTAAGCCACAGTGGAATAACAGCATTTTCTTGCAGTCTAATCCAATTGGAGCCAAGAATCAGGGTGTAAGCAAGGGACTGGTGGCAAAACGCCTTCTTAGCACGATGCATGGGAGTGGAATCTCCCCAGATTTTGTATTGTGCATAGGAGATGACCGGTCTGATGAAGACATGTTTGAGGTCATTAGCAGCTCTGTGGCCGGCCCATGCATAGCTCCAAATGCAGAAGTGTTTGCCTGCACCGTCGGTCGAAAACCCAGCAAGGCTAAGTACTATCTTGATGATACGGTTGAGATTGTTAGACTGATGAAGGGATTGGCCTGTGTTTCGGACCAAGAAGAGTCTGAATAG

Network for GWHGAAZE022500

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00982.22	Glyco_transf_20	63	552	1.30E-185
PF02358.17	Trehalose_PPase	602	852	1.20E-69

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K16055	TPS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005992	biological_process	trehalose biosynthetic process
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	57.704
	SRR3591706	second leaf	11.336
	SRR3591707	mature leaf	11.619
	SRR3591708	Shoot apex	46.931
	SRR3591709	Stem	48.217
	SRR3591710	White floral bud	233.930
	SRR3591711	White flower	177.670
	SRR3591712	Green floral bud	124.072
	SRR3591713	Yellow flower	193.067
SRP173429	SRR8316895	Juvenile bud stage	38.681
	SRR8316896	Juvenile bud stage	65.796
	SRR8316897	Juvenile bud stage	25.344
	SRR8316894	Third green stage	30.433
	SRR8316900	Third green stage	122.433
	SRR8316901	Third green stage	153.725
	SRR8316898	Complete white stage	204.579
	SRR8316899	Complete white stage	513.474
	SRR8316903	Complete white stage	321.751
	SRR8316902	Silver flowering stage	95.575
	SRR8316904	Silver flowering stage	136.832
	SRR8316905	Silver flowering stage	75.753
	SRR8316906	Gold flowering stage	252.057
	SRR8316907	Gold flowering stage	216.831
	SRR8316908	Gold flowering stage	190.363
SRP132670	SRR6706286	Control	309.700
	SRR6706287	Light intensity 50%	292.959
	SRR6706288	Light intensity 20%	299.446
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	48.568
	CNS0095593	Slightly white alabastrum(diploid) 2	44.583
	CNS0095594	Slightly white alabastrum(diploid) 3	53.158
	CNS0095595	Whole white alabastrum(diploid) 2	63.514
	CNS0095596	Whole white alabastrum(diploid) 3	67.738
	CNS0095597	Whole white alabastrum(diploid) 4	89.825
	CNS0095598	Silvery flower (diploied) 1	94.540
	CNS0095599	Silvery flower (diploied) 2	91.666
	CNS0095600	Silvery flower (diploied) 3	443.815
	CNS0095601	Golden flower (diploid) 1	118.810
	CNS0095602	Golden flower (diploid) 2	331.147
	CNS0095603	Golden flower (diploid) 3	322.427
	CNS0095604	Slightly white alabastrum(tetraploid) 1	44.107
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.378
	CNS0095606	Slightly white alabastrum(tetraploid) 3	95.948
	CNS0095607	Whole white alabastrum(tetraploid) 1	39.155
	CNS0095608	Whole white alabastrum(tetraploid) 2	49.453
	CNS0095609	Whole white alabastrum(tetraploid) 3	125.894
	CNS0095610	Silvery flower (diploied) 1	393.432
	CNS0095611	Silvery flower (diploied) 2	562.044
	CNS0095612	Silvery flower (diploied) 3	309.539
	CNS0095613	Golden flower (tetraploid) 1	178.736
	CNS0095614	Golden flower (tetraploid) 2	244.098
	CNS0095615	Golden flower (tetraploid) 3	490.023
CRA001975	CRR073297	Stem 1	171.448
	CRR073298	Stem 2	162.069
	CRR073299	Stem 3	145.948
	CRR073300	Leaf 1	352.145
	CRR073301	Leaf 2	282.788
	CRR073302	Leaf 3	250.881
	CRR073303	Juvenile bud 1	437.480
	CRR073304	Juvenile bud 2	534.611
	CRR073305	Juvenile bud 3	704.731
	CRR073306	Third green 1	138.917
	CRR073307	Third green 2	86.617
	CRR073308	Third green 3	104.596
	CRR073309	Second white 1	77.378
	CRR073310	Second white 2	49.847
	CRR073311	Second white 3	55.273
	CRR073312	Silver flowering 1	30.478
	CRR073313	Silver flowering 2	21.537
	CRR073314	Silver flowering 3	19.525
	CRR073315	Gold flowering 1	37.344
	CRR073316	Gold flowering 2	53.132
	CRR073317	Gold flowering 3	46.648
	CRR073318	Tawny withering 1	43.678
	CRR073319	Tawny withering 2	26.700
	CRR073320	Tawny withering 3	35.410