Gene detail

Detail information of GWHGAAZE022530

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003635099.1	0	PREDICTED: cysteine protease ATG4 isoform X2 [Vitis vinifera]
Swissprot	tr\|A2Q1V6\|ATG4_MEDTR	0	Cysteine protease ATG4
trEMBL	tr\|D7TRB8\|D7TRB8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI33041.3}
TAIR10	AT2G44140.1	4E-128	Peptidase family C54 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	74066050	74072858	+
GWHAAZE00000006	mRNA	74066050	74072858	+
GWHAAZE00000006	exon	74066050	74066512	+
GWHAAZE00000006	exon	74066667	74066767	+
GWHAAZE00000006	exon	74066902	74066952	+
GWHAAZE00000006	exon	74067102	74067481	+
GWHAAZE00000006	exon	74071292	74071430	+
GWHAAZE00000006	exon	74072262	74072317	+
GWHAAZE00000006	exon	74072437	74072507	+
GWHAAZE00000006	exon	74072647	74072858	+
GWHAAZE00000006	CDS	74066050	74066512	+
GWHAAZE00000006	CDS	74066667	74066767	+
GWHAAZE00000006	CDS	74066902	74066952	+
GWHAAZE00000006	CDS	74067102	74067481	+
GWHAAZE00000006	CDS	74071292	74071430	+
GWHAAZE00000006	CDS	74072262	74072317	+
GWHAAZE00000006	CDS	74072437	74072507	+
GWHAAZE00000006	CDS	74072647	74072858	+

Transcript Sequence
>GWHTAAZE022560 ATGAAGGGTTGCTCCGAGAGGACTGTTACTTCGGAATACTCTTTTAAAAGTTCCACTGATTCAGAAAATAGAAACCAGTGTTCCTCTGGTCCAGAGCCGGGACCAAGCGACAAGAAGTTCTCCAAGACTTCTTTGTGGTCGGGCTTGGCCTCAGCATTCTCAAAATTTGATAAACACAGTGAGTCTAAAGGTGCAGGAAAGAAGGGCAATAGCAGTAGTAGAGTCCATGGTTGGAGTACAGCTGTGAAGAGAATAATGAATGTCAGCTCAATGAGGAGGATTCAAGAGCGTGTGCTAGGGCTAAACAAGACTGAACTTTCTATCTCAATGAGTGACATATGGCTTCTGGGTGTGTGCTACAAAATGCATCTAGAAGATATATCTGCAGATCCAGCTCAGAGCGACAGATTTGCAGCATTTGTTGAAGATTTCTCTTCAAGGATTAGAACAACATATCGCAAAGGGTTTACGGCTATTGGAGATTCAAAGTTTACTAGTGATGTGCATTGGGGATGCATGCTTCGAAGCAGTCAGATGCTTGTTGCTCAGGTACTGTACTGTGTTGCATTAATTTGTCATCGATTAGGCAGATCTTGGAGAAAAGTTCCACCCAAGTCACTGAATCAAGACTATATTGAGATATTGCATCTTTTTGGTGATTCTGAGGCTGCAGCTTTTTCTATCCACAATCTTCTTCAAGCTGGAAAGGCTTATGCCCTTGCTCCTGGATCATGGGTGGGCCCATATGCCATGTGTCGCACATGGGAAACTCTAGCACGCTGTAAGGTCAAGGAAACTGAACTTGAAGACCAGTCATTAAGAATGGCGATCTATGTGGTTTCTGGTGATGAAGATGGGGAACGTGGTGGAGCTCCTGTTGTTTGTATTGAAGATGCCTCTAGACATTGTATTGAGTTTTCAAGAGGCCAAGCTGATTGGACACCTATTCTTCTGTTGGTTCCTTTGGTTCTAGGACTTGATAAACTCAATTCCAGGTATATTCCGTTATTGGTGGCAACATTCACCTTTCCTCAGAGCCTTGGCATCTTGGGTGGCCGGCCTGGTGTTTCAACGTACATTGTCGGGGTCCAAGATGACAGAGTCTTTTACCTTGATCCACATGAAGTTCAGCAGGTAGTTGATATCAGGACGGATAATCTTGAAGCTGATACTTCATCATATCACTGCAATGTTATACGGCAGATGCCACTTGACTCGGTCGATCCTTCCTTGGCAATTGGATTTTATTGCCGAGACAGAGATGATTTTGATGATTTTTGTAAGAGGGCTTGTGAGCTAGTGGAGAAATCAAATGGGGCTCCATTATTTACTGTAACAAAGAGCCGCAGTTTGCCTAAGCCAGCAACCGGTCACCATGACAGTGGCAGGATTCCCGACGATGATTCCTTTGACGTGGGGCCAAGTGGCGATGCCAAGGTCTCTACACAAGAAGATGACTGGCAACTCCTCTGA

Network for GWHGAAZE022530

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03416.20	Peptidase_C54	139	429	1.40E-84

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08342	ATG4	Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.127
	SRR3591706	second leaf	20.400
	SRR3591707	mature leaf	26.914
	SRR3591708	Shoot apex	30.766
	SRR3591709	Stem	32.929
	SRR3591710	White floral bud	28.742
	SRR3591711	White flower	33.284
	SRR3591712	Green floral bud	25.054
	SRR3591713	Yellow flower	22.078
SRP173429	SRR8316895	Juvenile bud stage	18.468
	SRR8316896	Juvenile bud stage	22.174
	SRR8316897	Juvenile bud stage	11.144
	SRR8316894	Third green stage	8.687
	SRR8316900	Third green stage	20.337
	SRR8316901	Third green stage	19.288
	SRR8316898	Complete white stage	14.211
	SRR8316899	Complete white stage	43.459
	SRR8316903	Complete white stage	18.743
	SRR8316902	Silver flowering stage	13.375
	SRR8316904	Silver flowering stage	18.013
	SRR8316905	Silver flowering stage	8.555
	SRR8316906	Gold flowering stage	27.573
	SRR8316907	Gold flowering stage	25.331
	SRR8316908	Gold flowering stage	27.562
SRP132670	SRR6706286	Control	22.284
	SRR6706287	Light intensity 50%	22.156
	SRR6706288	Light intensity 20%	23.447
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.714
	CNS0095593	Slightly white alabastrum(diploid) 2	14.850
	CNS0095594	Slightly white alabastrum(diploid) 3	14.131
	CNS0095595	Whole white alabastrum(diploid) 2	12.955
	CNS0095596	Whole white alabastrum(diploid) 3	12.122
	CNS0095597	Whole white alabastrum(diploid) 4	14.446
	CNS0095598	Silvery flower (diploied) 1	20.342
	CNS0095599	Silvery flower (diploied) 2	19.975
	CNS0095600	Silvery flower (diploied) 3	30.179
	CNS0095601	Golden flower (diploid) 1	15.222
	CNS0095602	Golden flower (diploid) 2	28.687
	CNS0095603	Golden flower (diploid) 3	30.611
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.093
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.462
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.006
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.762
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.717
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.423
	CNS0095610	Silvery flower (diploied) 1	31.618
	CNS0095611	Silvery flower (diploied) 2	32.552
	CNS0095612	Silvery flower (diploied) 3	26.835
	CNS0095613	Golden flower (tetraploid) 1	15.923
	CNS0095614	Golden flower (tetraploid) 2	23.571
	CNS0095615	Golden flower (tetraploid) 3	24.939
CRA001975	CRR073297	Stem 1	29.412
	CRR073298	Stem 2	26.895
	CRR073299	Stem 3	28.213
	CRR073300	Leaf 1	28.086
	CRR073301	Leaf 2	27.520
	CRR073302	Leaf 3	27.552
	CRR073303	Juvenile bud 1	29.392
	CRR073304	Juvenile bud 2	20.261
	CRR073305	Juvenile bud 3	29.447
	CRR073306	Third green 1	22.163
	CRR073307	Third green 2	21.626
	CRR073308	Third green 3	20.959
	CRR073309	Second white 1	23.161
	CRR073310	Second white 2	20.412
	CRR073311	Second white 3	19.518
	CRR073312	Silver flowering 1	17.889
	CRR073313	Silver flowering 2	15.439
	CRR073314	Silver flowering 3	16.968
	CRR073315	Gold flowering 1	24.909
	CRR073316	Gold flowering 2	21.726
	CRR073317	Gold flowering 3	26.009
	CRR073318	Tawny withering 1	24.450
	CRR073319	Tawny withering 2	20.249
	CRR073320	Tawny withering 3	20.841