Gene detail

Detail information of GWHGAAZE022540

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHN16552.1	4.0903E-164	Phosphoglucomutase, cytoplasmic [Glycine soja]
COG	YP_720925.1	2E-75	phosphoglucomutase
Swissprot	tr\|Q9M4G4\|PGMC_SOLTU	6E-146	Phosphoglucomutase, cytoplasmic
trEMBL	tr\|M4E713\|M4E713_BRARP	8E-155	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Bra024568.1-P}
TAIR10	AT1G23190.1	2E-83	Phosphoglucomutase/phosphomannomutase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	74183252	74187009	-
GWHAAZE00000006	mRNA	74183252	74187009	-
GWHAAZE00000006	exon	74183252	74183323	-
GWHAAZE00000006	exon	74183430	74183546	-
GWHAAZE00000006	exon	74183757	74183889	-
GWHAAZE00000006	exon	74184434	74184497	-
GWHAAZE00000006	exon	74184925	74184969	-
GWHAAZE00000006	exon	74185053	74185156	-
GWHAAZE00000006	exon	74185404	74185432	-
GWHAAZE00000006	exon	74185513	74185635	-
GWHAAZE00000006	exon	74185757	74185835	-
GWHAAZE00000006	exon	74185947	74186006	-
GWHAAZE00000006	exon	74186440	74186538	-
GWHAAZE00000006	exon	74186790	74186881	-
GWHAAZE00000006	exon	74186974	74187009	-
GWHAAZE00000006	CDS	74186974	74187009	-
GWHAAZE00000006	CDS	74186790	74186881	-
GWHAAZE00000006	CDS	74186440	74186538	-
GWHAAZE00000006	CDS	74185947	74186006	-
GWHAAZE00000006	CDS	74185757	74185835	-
GWHAAZE00000006	CDS	74185513	74185635	-
GWHAAZE00000006	CDS	74185404	74185432	-
GWHAAZE00000006	CDS	74185053	74185156	-
GWHAAZE00000006	CDS	74184925	74184969	-
GWHAAZE00000006	CDS	74184434	74184497	-
GWHAAZE00000006	CDS	74183757	74183889	-
GWHAAZE00000006	CDS	74183430	74183546	-
GWHAAZE00000006	CDS	74183252	74183323	-

Transcript Sequence
>GWHTAAZE022570 ATGATTTCTGCTTTGCCTGTTCTATTTGAACTTTCTGATTTTGGAATTAAATACAACAAGAAAAATGGTGGACCTGCTCCACAAGCAATTACCGACAAGATCTATGAGAACACTAAAACAATCAAGGAGTGGATCTCTGCAATAGGCATAACAAGCTTCGGAGGTCCTGAGGGACAATTTGACGTTGATGTTTTTGATTCAGCTACTGATTATGTGAAATTGATGAAGTCAATATTTGATTTCCAGTCTCTCCAGAAGTTGCTTTCATCTCCAAAATTCACATTTTGTTATGATGCACTTCATGGAGTTGCTGGAGCTTATGCTAAAAGTATATTTGTTGAAGAGTTGTTGAACTGCGTACCTAAGGAGGATTTTGGTGGAGGCCATCCAGATTCCAACCTGACATATGCAAAGGAGTTAGTAGCACGTATGGGGCTGGGAAAGTCAAATGCTGAACATGAGCCACCAGAATTTGGTGCTGTGCTGATGGAATCTGAATTTTTCTTTTGTGATGTCAGGGGCATGCCTACATCAGCAGCTCTTGATGTAGTAGCCAAACATTTAGACTTGAAATTCTTTGAGGTACTTCTCCATTGCTCAAACTTTATAATACTTGCTATAGATGCTGGACTATGTTCAGTTTGTGGTGAAGAAAGTTTTGGAACTGGTGCTGCAAAGGAACTAGTGGAACACTTGATCAAGCTGCAATATTCCCTTCTTGAAGTTAACAAGATTATAAAGGGAATACGATCAGACGTGGCAAATGTTTCCAACGCTGATGAATTCGAATACAAAGACCTTGTTGAAAGTTCCATCTCAAAGCATCAGGGTATTTGGTATCTGTTTGAAGATGGGTCAAGACTGGTGTTCCGTCTCTCTGGCACTGGCTCGGAGGGTGCTACTATTCGTCTTTACATTGAGCAATATGAGAAGGATTCAACCAAGACTGGCAGAGATTCTCAAGAAGCACTTGCTCCACTTGTGGAAGTTGCCCTCAAGCTGTCCAAGATGCAGGAATTCACTAGCCAATCTGCTCCCACAGTTCTCACATAG

Network for GWHGAAZE022540

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00408.21	PGM_PMM_IV	269	319	6.90E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01835	pgm	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Glycolysis / Gluconeogenesis	map00010
		Pentose phosphate pathway	map00030
		Galactose metabolism	map00052
		Starch and sucrose metabolism	map00500
		Amino sugar and nucleotide sugar metabolism	map00520
		Purine metabolism	map00230
		Streptomycin biosynthesis	map00521

Gene Ontology

GO term	Ontology	Name
GO:0071704	biological_process	organic substance metabolic process
GO:0005975	biological_process	carbohydrate metabolic process
GO:0016868	molecular_function	intramolecular transferase activity, phosphotransferases

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.228
	SRR8316896	Juvenile bud stage	0.438
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.049
	SRR8316900	Third green stage	0.286
	SRR8316901	Third green stage	0.092
	SRR8316898	Complete white stage	0.114
	SRR8316899	Complete white stage	0.440
	SRR8316903	Complete white stage	0.127
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.059
	SRR6706287	Light intensity 50%	0.100
	SRR6706288	Light intensity 20%	0.219
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.179
	CNS0095593	Slightly white alabastrum(diploid) 2	0.232
	CNS0095594	Slightly white alabastrum(diploid) 3	0.467
	CNS0095595	Whole white alabastrum(diploid) 2	0.185
	CNS0095596	Whole white alabastrum(diploid) 3	0.522
	CNS0095597	Whole white alabastrum(diploid) 4	0.027
	CNS0095598	Silvery flower (diploied) 1	0.127
	CNS0095599	Silvery flower (diploied) 2	0.095
	CNS0095600	Silvery flower (diploied) 3	0.048
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.039
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.004
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.033
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.017
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.002
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.488
	CRR073298	Stem 2	0.496
	CRR073299	Stem 3	0.066
	CRR073300	Leaf 1	0.477
	CRR073301	Leaf 2	0.304
	CRR073302	Leaf 3	0.042
	CRR073303	Juvenile bud 1	0.055
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.209
	CRR073306	Third green 1	0.026
	CRR073307	Third green 2	0.007
	CRR073308	Third green 3	0.170
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.007
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.298
	CRR073316	Gold flowering 2	0.050
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.124
	CRR073320	Tawny withering 3	0.127