Gene detail

Detail information of GWHGAAZE022695

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG05227.1	0	nsp-interacting kinase 2 -like protein [Gossypium arboreum]
COG	YP_004775215.1	2E-18	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9LFS4\|NIK1_ARATH	0	Protein NSP-INTERACTING KINASE 1 (Precursor)
trEMBL	tr\|V4T3J0\|V4T3J0_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR44116.1}
TAIR10	AT5G16000.1	1E-142	NSP-interacting kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	77043726	77046583	+
GWHAAZE00000006	mRNA	77043726	77046583	+
GWHAAZE00000006	exon	77043726	77043831	+
GWHAAZE00000006	exon	77043918	77044050	+
GWHAAZE00000006	exon	77044135	77044206	+
GWHAAZE00000006	exon	77044338	77044481	+
GWHAAZE00000006	exon	77044618	77044689	+
GWHAAZE00000006	exon	77044785	77044844	+
GWHAAZE00000006	exon	77044938	77045035	+
GWHAAZE00000006	exon	77045128	77045301	+
GWHAAZE00000006	exon	77045380	77045789	+
GWHAAZE00000006	exon	77046263	77046583	+
GWHAAZE00000006	CDS	77043726	77043831	+
GWHAAZE00000006	CDS	77043918	77044050	+
GWHAAZE00000006	CDS	77044135	77044206	+
GWHAAZE00000006	CDS	77044338	77044481	+
GWHAAZE00000006	CDS	77044618	77044689	+
GWHAAZE00000006	CDS	77044785	77044844	+
GWHAAZE00000006	CDS	77044938	77045035	+
GWHAAZE00000006	CDS	77045128	77045301	+
GWHAAZE00000006	CDS	77045380	77045789	+
GWHAAZE00000006	CDS	77046263	77046583	+

Transcript Sequence
>GWHTAAZE022725 ATGGAAATAAGGAGAATAGAGGAGGCTCTTTTGTGTTGTTTGGCTTTCTTTAGCTTCTTGGCTTCTGTTTCTGCTTTGCTTTCTTCAAAAGGTGTCAACTTTGAAGTACAAGCTTTGATCAACATTAAAGCTTCTTTGGAGGATCCTCATGGTGTTCTTGATAAATGGGATTCAGACGCGGTCGATCCATGTAGCTGGACAATGGTTACATGTTCACCCGATAATCTAGTCATTGGCCTAGGAACTCCAAGCCAAAATTTATCTGGTACTCTATCCCCCAGTATTGGTAACTTGACAAATCTACAGACAGTGTTATTACAGAACAATAATATATCAGGGCCACTTCCCTCTGAGCTTGGTAGGCTCCAAAAACTTGAAACACTTGATCTCTCTAACAACTACTTCACCGGCGAAATTCCGTCTTCATTAGCCCATCTGAAAAGCCTCCAGTATTTGCGGGTAAACAATAACAGTCTCTCTGGGCCAATTCCTTCTTCTTTGGCTAACATGACCCAGCTCACATTTTTGGATCTGTCTTTCAATAATTTGAGCGGTCCATTACATGGGTTTCTTGCTAAAACATTCAACATTTTGGGGAACCCTATGATATGTGCAACTGGAACAGAGCAAGACTGCAATGAAAAGACACCTATGCCAATGTCTCTGCCTTTCAATGCAAAACAAAATTCTCAACCTTCCGGAAGAACTAAAAGCCAGAAAATTGCCTTGGCATTCGGGACCAGCCTTGGTTGCATTGGCCTTCTAATTCTCGGGTTTGGCTTCCTTCTCTGGTGGAGGCAAAGACACAACCAGCAAATATTCTTCGATATTAATGGAACGACGAAAATTAGCTCAACAAAACACCACCGCGAAGAAGTGTGCCTAGGTAATTTGAGGAGATTCCAATTCAGAGAACTTCAGATTGCCACAAACTACTTCACCAGCAAGAACATACTTGGGAAGGGCGGTTTTGGAATTGTCTATAAAGGATATCTCCAAGATGGTACCGTTGTAGCTGTAAAACGTCTCAAAGATGGAAATGCCGTAGGAGGGGAGATCCAATTCCAGACCGAAGTCGAGATGATAAGTCTAGCGGTGCACCGGAATCTCCTCCGGCTCTATGGGTTTTGTATGACATCATCAGAAAGGCTCTTGGTCTACCCTTACATGTCCAACGGAAGTGTTGCTTCACGCCTCAAAGGTAAAAGAACAACAAGTACTGCTAATAATACATCTCAATTATGCTTCTCCAAAAACAATAATATCTTAGTGAAGAAGATTCACCAAGAAAAAAAACTTGACATATTAGTGGACAAGGACCTGAAGAACAACTATGATAGAATCGAGCTCGAGGAGATTGTTCAAGTGGCACTATTGTGTACCCAAAATCTTCCTAGTCAAAGACCAAAGATGTCTGAAGTGGTTCGGATGCTTGAAGGAGATGGGCTCGCAGAGAAATGGGAAGCTTCTCAGAGAGCAGAGGTAACTAAGTGCAGAGCCAACGAGTTCTCATCTTCAGAGCGATATTCCGATCTTACAGATGACTCTTCATTGCTTGTTCAAGCTATGGAACTCTCTGGACCTAGGTGA

Network for GWHGAAZE022695

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	35	72	8.10E-13
PF13855.7	LRR_8	124	183	2.10E-09
PF07714.18	PK_Tyr_Ser-Thr	316	414	5.50E-14

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-II

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.276
	SRR3591706	second leaf	10.989
	SRR3591707	mature leaf	8.913
	SRR3591708	Shoot apex	33.552
	SRR3591709	Stem	58.437
	SRR3591710	White floral bud	2.813
	SRR3591711	White flower	2.864
	SRR3591712	Green floral bud	5.135
	SRR3591713	Yellow flower	0.570
SRP173429	SRR8316895	Juvenile bud stage	5.635
	SRR8316896	Juvenile bud stage	7.695
	SRR8316897	Juvenile bud stage	2.697
	SRR8316894	Third green stage	3.203
	SRR8316900	Third green stage	4.607
	SRR8316901	Third green stage	3.614
	SRR8316898	Complete white stage	0.571
	SRR8316899	Complete white stage	4.739
	SRR8316903	Complete white stage	1.006
	SRR8316902	Silver flowering stage	0.254
	SRR8316904	Silver flowering stage	0.110
	SRR8316905	Silver flowering stage	0.036
	SRR8316906	Gold flowering stage	0.110
	SRR8316907	Gold flowering stage	0.060
	SRR8316908	Gold flowering stage	0.228
SRP132670	SRR6706286	Control	3.491
	SRR6706287	Light intensity 50%	3.468
	SRR6706288	Light intensity 20%	3.125
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.971
	CNS0095593	Slightly white alabastrum(diploid) 2	5.615
	CNS0095594	Slightly white alabastrum(diploid) 3	5.461
	CNS0095595	Whole white alabastrum(diploid) 2	3.298
	CNS0095596	Whole white alabastrum(diploid) 3	4.298
	CNS0095597	Whole white alabastrum(diploid) 4	2.088
	CNS0095598	Silvery flower (diploied) 1	1.983
	CNS0095599	Silvery flower (diploied) 2	2.358
	CNS0095600	Silvery flower (diploied) 3	1.507
	CNS0095601	Golden flower (diploid) 1	2.081
	CNS0095602	Golden flower (diploid) 2	2.181
	CNS0095603	Golden flower (diploid) 3	1.761
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.637
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.774
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.398
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.121
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.250
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.496
	CNS0095610	Silvery flower (diploied) 1	0.579
	CNS0095611	Silvery flower (diploied) 2	1.631
	CNS0095612	Silvery flower (diploied) 3	0.370
	CNS0095613	Golden flower (tetraploid) 1	0.125
	CNS0095614	Golden flower (tetraploid) 2	0.780
	CNS0095615	Golden flower (tetraploid) 3	0.234
CRA001975	CRR073297	Stem 1	10.585
	CRR073298	Stem 2	9.769
	CRR073299	Stem 3	14.882
	CRR073300	Leaf 1	5.615
	CRR073301	Leaf 2	4.824
	CRR073302	Leaf 3	5.386
	CRR073303	Juvenile bud 1	4.773
	CRR073304	Juvenile bud 2	2.040
	CRR073305	Juvenile bud 3	5.195
	CRR073306	Third green 1	1.383
	CRR073307	Third green 2	1.453
	CRR073308	Third green 3	1.063
	CRR073309	Second white 1	0.084
	CRR073310	Second white 2	0.028
	CRR073311	Second white 3	0.124
	CRR073312	Silver flowering 1	0.054
	CRR073313	Silver flowering 2	0.002
	CRR073314	Silver flowering 3	0.116
	CRR073315	Gold flowering 1	5.523
	CRR073316	Gold flowering 2	6.379
	CRR073317	Gold flowering 3	6.456
	CRR073318	Tawny withering 1	61.839
	CRR073319	Tawny withering 2	36.242
	CRR073320	Tawny withering 3	72.725