Gene detail

Detail information of GWHGAAZE022731

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008243825.1	1.0475E-134	PREDICTED: probable 6-phosphogluconolactonase 1 [Prunus mume]
COG	YP_001321257.1	4E-46	6-phosphogluconolactonase
Swissprot	tr\|Q75IV7\|6PGL1_ORYSJ	5E-114	Probable 6-phosphogluconolactonase 1
trEMBL	tr\|M5XBA8\|M5XBA8_PRUPE	1E-134	Uncharacterized protein {ECO:0000313\|EMBL:EMJ23392.1}
TAIR10	AT1G13700.1	3E-84	6-phosphogluconolactonase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	77717181	77719978	-
GWHAAZE00000006	mRNA	77717181	77719978	-
GWHAAZE00000006	exon	77719806	77719978	-
GWHAAZE00000006	exon	77719622	77719697	-
GWHAAZE00000006	exon	77717181	77717675	-
GWHAAZE00000006	CDS	77719806	77719978	-
GWHAAZE00000006	CDS	77719622	77719697	-
GWHAAZE00000006	CDS	77717181	77717675	-

Transcript Sequence
>GWHTAAZE022761 ATGGCTCTCTCTGGAGCTCAAAAAGATGGAAGGGTACTGAGGATCCACGAAAGCTTGGACGAGCTTAGGACCGATTTGGCAGAGTACATTGCGGAAATATCGGAGGCGTGTGTGAAAGAGAGGGGCATTTTCACCATTGCCTTATCGGGTGGTTCCCTTGTTGACTTGATGAGTAAACTGTGTGAAGCTCCATATAACAAGACAGTTGACTGGGCCAAATGGTATATATTCTGGGTCGACGAACGTGCCCTACCTATTATCCCGAGTCATGTCCATTCTATCAAGGATTCAGTTTCCGCAGAGGAAGCCGCTGATGAGTACGAGTTTGTCATAAGACAGCTCGTAAAGAGCCGCATTGTAGGAGTATCTGAGGTCAGCGACTGCCCCAAGTTTGACCTAATCCTCCTAGGATTGGGCCCGGATGGGCATGTTGCATCACTGTTCCCAAACCACCCAGTGCTTGAGGTGAAAGAGGAATGGGTAACTTTTATAACAGACTCGCCCAAGCCGCCACCCGAGAGGATCACATTCACACTGCCCGTTATCAACTCCGCGTCCAACGTGGCTCTGGTCGCAACAGGTGGCACCAAAGCAGAGGCCGTGTACTCAGCAATTGGAGGTGGGTCAGACACTCCGTCAGTGCCAGCTAAGATGGTCCGGCCAACTAATGGGAAGCTGGCTTGGTTTTTGGACCAACCGGCTGCATCAAAGTTCGAGGGGTCTCAAGTTTCAAGCGAGGGCTAA

Network for GWHGAAZE022731

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01182.21	Glucosamine_iso	85	228	1.40E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01057	PGLS, pgl, devB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Pentose phosphate pathway	map00030

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0006098	biological_process	pentose-phosphate shunt
GO:0017057	molecular_function	6-phosphogluconolactonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.417
	SRR3591706	second leaf	9.714
	SRR3591707	mature leaf	8.352
	SRR3591708	Shoot apex	40.822
	SRR3591709	Stem	14.913
	SRR3591710	White floral bud	15.720
	SRR3591711	White flower	18.406
	SRR3591712	Green floral bud	9.871
	SRR3591713	Yellow flower	11.678
SRP173429	SRR8316895	Juvenile bud stage	14.726
	SRR8316896	Juvenile bud stage	11.933
	SRR8316897	Juvenile bud stage	4.614
	SRR8316894	Third green stage	7.312
	SRR8316900	Third green stage	9.496
	SRR8316901	Third green stage	9.888
	SRR8316898	Complete white stage	2.280
	SRR8316899	Complete white stage	17.661
	SRR8316903	Complete white stage	6.378
	SRR8316902	Silver flowering stage	2.415
	SRR8316904	Silver flowering stage	6.025
	SRR8316905	Silver flowering stage	0.999
	SRR8316906	Gold flowering stage	3.296
	SRR8316907	Gold flowering stage	19.446
	SRR8316908	Gold flowering stage	6.748
SRP132670	SRR6706286	Control	9.412
	SRR6706287	Light intensity 50%	10.024
	SRR6706288	Light intensity 20%	8.020
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.962
	CNS0095593	Slightly white alabastrum(diploid) 2	16.452
	CNS0095594	Slightly white alabastrum(diploid) 3	14.685
	CNS0095595	Whole white alabastrum(diploid) 2	10.644
	CNS0095596	Whole white alabastrum(diploid) 3	9.065
	CNS0095597	Whole white alabastrum(diploid) 4	6.192
	CNS0095598	Silvery flower (diploied) 1	24.636
	CNS0095599	Silvery flower (diploied) 2	20.862
	CNS0095600	Silvery flower (diploied) 3	16.932
	CNS0095601	Golden flower (diploid) 1	15.715
	CNS0095602	Golden flower (diploid) 2	20.183
	CNS0095603	Golden flower (diploid) 3	21.971
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.089
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.931
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.908
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.495
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.830
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.056
	CNS0095610	Silvery flower (diploied) 1	14.940
	CNS0095611	Silvery flower (diploied) 2	18.330
	CNS0095612	Silvery flower (diploied) 3	7.072
	CNS0095613	Golden flower (tetraploid) 1	8.218
	CNS0095614	Golden flower (tetraploid) 2	10.585
	CNS0095615	Golden flower (tetraploid) 3	19.622
CRA001975	CRR073297	Stem 1	13.912
	CRR073298	Stem 2	13.874
	CRR073299	Stem 3	16.673
	CRR073300	Leaf 1	11.402
	CRR073301	Leaf 2	8.449
	CRR073302	Leaf 3	10.620
	CRR073303	Juvenile bud 1	5.957
	CRR073304	Juvenile bud 2	3.250
	CRR073305	Juvenile bud 3	5.508
	CRR073306	Third green 1	1.289
	CRR073307	Third green 2	6.152
	CRR073308	Third green 3	5.457
	CRR073309	Second white 1	1.365
	CRR073310	Second white 2	2.716
	CRR073311	Second white 3	2.212
	CRR073312	Silver flowering 1	2.241
	CRR073313	Silver flowering 2	2.606
	CRR073314	Silver flowering 3	3.630
	CRR073315	Gold flowering 1	11.265
	CRR073316	Gold flowering 2	18.035
	CRR073317	Gold flowering 3	12.241
	CRR073318	Tawny withering 1	18.307
	CRR073319	Tawny withering 2	12.800
	CRR073320	Tawny withering 3	24.414