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Detail information of GWHGAAZE022792
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_011017371.1
1.5675E-102
PREDICTED: MADS-box protein CMB1-like isoform X4 [Populus euphratica]
Swissprot
tr|Q38836|AGL11_ARATH
4E-16
Agamous-like MADS-box protein AGL11
trEMBL
tr|B9HI83|B9HI83_POPTR
3E-101
MADS-box family protein {ECO:0000313|EMBL:EEE88675.1}
TAIR10
AT2G03060.2
5E-55
AGAMOUS-like 30
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000006
gene
78644766
78648938
-
GWHAAZE00000006
mRNA
78644766
78648938
-
GWHAAZE00000006
exon
78648754
78648938
-
GWHAAZE00000006
exon
78648324
78648530
-
GWHAAZE00000006
exon
78648202
78648220
-
GWHAAZE00000006
exon
78648020
78648084
-
GWHAAZE00000006
exon
78647902
78647917
-
GWHAAZE00000006
exon
78647737
78647798
-
GWHAAZE00000006
exon
78646604
78646700
-
GWHAAZE00000006
exon
78645769
78645816
-
GWHAAZE00000006
exon
78645464
78645654
-
GWHAAZE00000006
exon
78644766
78645273
-
GWHAAZE00000006
CDS
78648754
78648938
-
GWHAAZE00000006
CDS
78648324
78648530
-
GWHAAZE00000006
CDS
78648202
78648220
-
GWHAAZE00000006
CDS
78648020
78648084
-
GWHAAZE00000006
CDS
78647902
78647917
-
GWHAAZE00000006
CDS
78647737
78647798
-
GWHAAZE00000006
CDS
78646604
78646700
-
GWHAAZE00000006
CDS
78645769
78645816
-
GWHAAZE00000006
CDS
78645464
78645654
-
GWHAAZE00000006
CDS
78644766
78645273
-
Transcript Sequence
>GWHTAAZE022822 ATGGGGCGGGTCAAGCTAGCAATAAAGAAGATTGGGAGTAGTTCGGGGCGCCAATCAACCTATGGCAAACGCAAGAATGGTTTATTTAAAAAGGCTTCCGAGTTATCGATTCTATGTGACATTGATATTGTACTTCTCATGTTTTCACCAACCGGCAGGCCTACCTTATACACCGGAGAGAGCAGTGCTCTTTTTAGAGCCAAAGTGCTTTGTAATGATGGTTTAAATGTAACTCGTCATTTGTGTCCTCATGGTGACTTTTGCTATAATCACTGCTACTTCTGCTGTTACCACTTACGTTTGAAGGCCTCCCTCGTACCTCTCTTCTTCAGTACTCTTGAAGAGATTATTGGGAAGTTTTCTCAGCTTACTCCCCAGGAAAGGGCAAAGAGGAAGTTGGAGAGCCTTGAAGCATTGAAGAGAACTTATAGGAAGTTGGATCATGACTTAAATATACAAGAGTTTCTGGGTCCTTGTTACCAATCAGTTGAGGATATGACAGCTGAAGCAAATTTTTTGCGAACTCAACTATCCGAACTTCAGAAGAGATTGAGCTATTGGACTAGCATAGATAAGATTGATAGCATTGAAACATTGGAGCAATTGGAAGTTTCTCTCCTTACGTCACTTAATCAAATTCACACAGATAAGGTAAATCATACAGTGCAACAAGAAATGGAAATACAGAGCGCTAACAAGTTCCAAGATAGGATGCATCTCCCCTTCAGTTTGGCTCTTGAGGAACAACTCCAACATTTTTCATGTATTCCTACTGATCATAGTCAACATATGGTTTTAAGCAAGGACCCAAGTTTGCTTCCCCAAAGGATGATTGGGTACCTACCAAGTTTCAAAGCTATTAATTCTGAAAATATGTTCGCTTTGCAGAGGGAATCAGAGTGCTCTGCGGTTACCTCCTTTGGGAGCTACTCTGGTTTTTTTGGTGCCAGCGAAAAGGTAGGTATAACTAAAATTGGGGAAGAACACGAGTTTGTTAATGAGTTGAGTAGAACTGGATCTTTTAGTCTACAGCAGAGGAAGCAACACAAACAAGTGCAAGAGCAACAACACCAGTATCCATCATATGATTTTGGTTTACTGTGTGATCAAATTTTTCCCTACCCAGAACTGATAAATGCAGAAGAAAATACTTGTGAATATAACATTGATGGAAGATATGAAGTTCCTCACTCTGCCCATGATGACTCCAGTCATTCTATTTGGGACTCTGCATCAGGAACTTGTACTGCTGCTACATTTGATGAGCATTTATACCCACTGGCAAGTTTCTCCTCTGTGCAATATTGTTTTATTTCAGGAGCTTGTTTTGTTATTCTGCAACTTTTGTTTCCTGGAAAATTTGTGCTTTTTGTTGCACAATTTCAATATTTACCTTGA
Network for GWHGAAZE022792
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF00319.19
SRF-TF
10
55
5.80E-19
Protein Sequence
>GWHPAAZE022808 MGRVKLAIKKIGSSSGRQSTYGKRKNGLFKKASELSILCDIDIVLLMFSPTGRPTLYTGESSALFRAKVLCNDGLNVTRHLCPHGDFCYNHCYFCCYHLRLKASLVPLFFSTLEEIIGKFSQLTPQERAKRKLESLEALKRTYRKLDHDLNIQEFLGPCYQSVEDMTAEANFLRTQLSELQKRLSYWTSIDKIDSIETLEQLEVSLLTSLNQIHTDKVNHTVQQEMEIQSANKFQDRMHLPFSLALEEQLQHFSCIPTDHSQHMVLSKDPSLLPQRMIGYLPSFKAINSENMFALQRESECSAVTSFGSYSGFFGASEKVGITKIGEEHEFVNELSRTGSFSLQQRKQHKQVQEQQHQYPSYDFGLLCDQIFPYPELINAEENTCEYNIDGRYEVPHSAHDDSSHSIWDSASGTCTAATFDEHLYPLASFSSVQYCFISGACFVILQLLFPGKFVLFVAQFQYLP
Gene family
Gene family
subfamily
Transcription Factors Family
MADS-M-type
KEGG pathway
KO
Enzyme
pathway
mapID
--
--
--
--
Gene Ontology
GO term
Ontology
Name
GO:0003677
molecular_function
DNA binding
GO:0046983
molecular_function
protein dimerization activity
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
1.080
SRR3591706
second leaf
0.821
SRR3591707
mature leaf
1.044
SRR3591708
Shoot apex
1.122
SRR3591709
Stem
2.897
SRR3591710
White floral bud
62.009
SRR3591711
White flower
9.319
SRR3591712
Green floral bud
41.885
SRR3591713
Yellow flower
5.461
SRP173429
SRR8316895
Juvenile bud stage
5.837
SRR8316896
Juvenile bud stage
9.041
SRR8316897
Juvenile bud stage
3.522
SRR8316894
Third green stage
3.777
SRR8316900
Third green stage
18.342
SRR8316901
Third green stage
15.674
SRR8316898
Complete white stage
0.727
SRR8316899
Complete white stage
4.573
SRR8316903
Complete white stage
1.655
SRR8316902
Silver flowering stage
0.853
SRR8316904
Silver flowering stage
1.195
SRR8316905
Silver flowering stage
0.352
SRR8316906
Gold flowering stage
0.988
SRR8316907
Gold flowering stage
0.510
SRR8316908
Gold flowering stage
0.633
SRP132670
SRR6706286
Control
11.242
SRR6706287
Light intensity 50%
10.759
SRR6706288
Light intensity 20%
11.949
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
17.158
CNS0095593
Slightly white alabastrum(diploid) 2
16.800
CNS0095594
Slightly white alabastrum(diploid) 3
13.001
CNS0095595
Whole white alabastrum(diploid) 2
47.058
CNS0095596
Whole white alabastrum(diploid) 3
50.973
CNS0095597
Whole white alabastrum(diploid) 4
70.986
CNS0095598
Silvery flower (diploied) 1
4.114
CNS0095599
Silvery flower (diploied) 2
6.220
CNS0095600
Silvery flower (diploied) 3
2.094
CNS0095601
Golden flower (diploid) 1
4.589
CNS0095602
Golden flower (diploid) 2
2.543
CNS0095603
Golden flower (diploid) 3
2.286
CNS0095604
Slightly white alabastrum(tetraploid) 1
34.942
CNS0095605
Slightly white alabastrum(tetraploid) 2
33.865
CNS0095606
Slightly white alabastrum(tetraploid) 3
6.357
CNS0095607
Whole white alabastrum(tetraploid) 1
84.418
CNS0095608
Whole white alabastrum(tetraploid) 2
87.697
CNS0095609
Whole white alabastrum(tetraploid) 3
39.535
CNS0095610
Silvery flower (diploied) 1
2.630
CNS0095611
Silvery flower (diploied) 2
5.526
CNS0095612
Silvery flower (diploied) 3
11.652
CNS0095613
Golden flower (tetraploid) 1
2.567
CNS0095614
Golden flower (tetraploid) 2
2.291
CNS0095615
Golden flower (tetraploid) 3
5.399
CRA001975
CRR073297
Stem 1
2.101
CRR073298
Stem 2
3.374
CRR073299
Stem 3
0.526
CRR073300
Leaf 1
9.452
CRR073301
Leaf 2
5.069
CRR073302
Leaf 3
2.563
CRR073303
Juvenile bud 1
6.853
CRR073304
Juvenile bud 2
5.313
CRR073305
Juvenile bud 3
1.214
CRR073306
Third green 1
2.382
CRR073307
Third green 2
2.112
CRR073308
Third green 3
2.435
CRR073309
Second white 1
0.218
CRR073310
Second white 2
0.814
CRR073311
Second white 3
1.030
CRR073312
Silver flowering 1
3.681
CRR073313
Silver flowering 2
3.075
CRR073314
Silver flowering 3
2.471
CRR073315
Gold flowering 1
4.238
CRR073316
Gold flowering 2
5.160
CRR073317
Gold flowering 3
1.160
CRR073318
Tawny withering 1
2.607
CRR073319
Tawny withering 2
2.600
CRR073320
Tawny withering 3
1.643