Detail information of GWHGAAZE022792


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011017371.11.5675E-102PREDICTED: MADS-box protein CMB1-like isoform X4 [Populus euphratica]
Swissprottr|Q38836|AGL11_ARATH4E-16Agamous-like MADS-box protein AGL11
trEMBLtr|B9HI83|B9HI83_POPTR3E-101MADS-box family protein {ECO:0000313|EMBL:EEE88675.1}
TAIR10AT2G03060.25E-55AGAMOUS-like 30

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene7864476678648938-
GWHAAZE00000006mRNA7864476678648938-
GWHAAZE00000006exon7864875478648938-
GWHAAZE00000006exon7864832478648530-
GWHAAZE00000006exon7864820278648220-
GWHAAZE00000006exon7864802078648084-
GWHAAZE00000006exon7864790278647917-
GWHAAZE00000006exon7864773778647798-
GWHAAZE00000006exon7864660478646700-
GWHAAZE00000006exon7864576978645816-
GWHAAZE00000006exon7864546478645654-
GWHAAZE00000006exon7864476678645273-
GWHAAZE00000006CDS7864875478648938-
GWHAAZE00000006CDS7864832478648530-
GWHAAZE00000006CDS7864820278648220-
GWHAAZE00000006CDS7864802078648084-
GWHAAZE00000006CDS7864790278647917-
GWHAAZE00000006CDS7864773778647798-
GWHAAZE00000006CDS7864660478646700-
GWHAAZE00000006CDS7864576978645816-
GWHAAZE00000006CDS7864546478645654-
GWHAAZE00000006CDS7864476678645273-
Transcript Sequence

Network for GWHGAAZE022792

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00319.19SRF-TF10555.80E-19
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyMADS-M-type

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding
GO:0046983molecular_functionprotein dimerization activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.080
SRR3591706second leaf0.821
SRR3591707mature leaf1.044
SRR3591708Shoot apex1.122
SRR3591709Stem2.897
SRR3591710White floral bud62.009
SRR3591711White flower9.319
SRR3591712Green floral bud41.885
SRR3591713Yellow flower5.461
SRP173429 SRR8316895Juvenile bud stage 5.837
SRR8316896Juvenile bud stage 9.041
SRR8316897Juvenile bud stage 3.522
SRR8316894Third green stage 3.777
SRR8316900Third green stage 18.342
SRR8316901Third green stage 15.674
SRR8316898Complete white stage 0.727
SRR8316899Complete white stage 4.573
SRR8316903Complete white stage 1.655
SRR8316902Silver flowering stage0.853
SRR8316904Silver flowering stage1.195
SRR8316905Silver flowering stage0.352
SRR8316906Gold flowering stage 0.988
SRR8316907Gold flowering stage 0.510
SRR8316908Gold flowering stage 0.633
SRP132670SRR6706286Control11.242
SRR6706287Light intensity 50%10.759
SRR6706288Light intensity 20%11.949
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.158
CNS0095593Slightly white alabastrum(diploid) 216.800
CNS0095594Slightly white alabastrum(diploid) 313.001
CNS0095595Whole white alabastrum(diploid) 247.058
CNS0095596Whole white alabastrum(diploid) 350.973
CNS0095597Whole white alabastrum(diploid) 470.986
CNS0095598Silvery flower (diploied) 14.114
CNS0095599Silvery flower (diploied) 26.220
CNS0095600Silvery flower (diploied) 32.094
CNS0095601Golden flower (diploid) 14.589
CNS0095602Golden flower (diploid) 22.543
CNS0095603Golden flower (diploid) 32.286
CNS0095604Slightly white alabastrum(tetraploid) 134.942
CNS0095605Slightly white alabastrum(tetraploid) 233.865
CNS0095606Slightly white alabastrum(tetraploid) 36.357
CNS0095607Whole white alabastrum(tetraploid) 184.418
CNS0095608Whole white alabastrum(tetraploid) 287.697
CNS0095609Whole white alabastrum(tetraploid) 339.535
CNS0095610Silvery flower (diploied) 12.630
CNS0095611Silvery flower (diploied) 25.526
CNS0095612Silvery flower (diploied) 311.652
CNS0095613Golden flower (tetraploid) 12.567
CNS0095614Golden flower (tetraploid) 22.291
CNS0095615Golden flower (tetraploid) 35.399
CRA001975CRR073297Stem 12.101
CRR073298Stem 23.374
CRR073299Stem 30.526
CRR073300Leaf 19.452
CRR073301Leaf 25.069
CRR073302Leaf 32.563
CRR073303Juvenile bud 16.853
CRR073304Juvenile bud 25.313
CRR073305Juvenile bud 31.214
CRR073306Third green 12.382
CRR073307Third green 22.112
CRR073308Third green 32.435
CRR073309Second white 10.218
CRR073310Second white 20.814
CRR073311Second white 31.030
CRR073312Silver flowering 13.681
CRR073313Silver flowering 23.075
CRR073314Silver flowering 32.471
CRR073315Gold flowering 14.238
CRR073316Gold flowering 25.160
CRR073317Gold flowering 31.160
CRR073318Tawny withering 12.607
CRR073319Tawny withering 22.600
CRR073320Tawny withering 31.643