Gene detail

Detail information of GWHGAAZE022822

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010652320.1	0	PREDICTED: protein kinase 2B, chloroplastic isoform X2 [Vitis vinifera]
COG	YP_004266623.1	1E-24	serine/threonine protein kinase with PASTA sensor(s)
Swissprot	tr\|O49840\|APK2B_ARATH	0	Protein kinase 2B, chloroplastic (Precursor)
trEMBL	tr\|D7TNC2\|D7TNC2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI31995.3}
TAIR10	AT2G02800.2	5E-173	protein kinase 2B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	79290962	79293894	+
GWHAAZE00000006	mRNA	79290962	79293894	+
GWHAAZE00000006	exon	79290962	79291022	+
GWHAAZE00000006	exon	79292087	79292427	+
GWHAAZE00000006	exon	79292509	79292644	+
GWHAAZE00000006	exon	79292783	79292919	+
GWHAAZE00000006	exon	79293055	79293178	+
GWHAAZE00000006	exon	79293440	79293894	+
GWHAAZE00000006	CDS	79290962	79291022	+
GWHAAZE00000006	CDS	79292087	79292427	+
GWHAAZE00000006	CDS	79292509	79292644	+
GWHAAZE00000006	CDS	79292783	79292919	+
GWHAAZE00000006	CDS	79293055	79293178	+
GWHAAZE00000006	CDS	79293440	79293894	+

Transcript Sequence
>GWHTAAZE022852 ATGGGTAACTGTTTAGATTCTTCTGCAAGAGTTGATGCCGCTCTCAGCTCCCCCACTTCTGGAGCCTCGAGAATTGGCAACAAAATCAGCAACTCTTCAGCCCGTTCCAGCCTAACAATTCCGTCTTACAGTGAAAAGAGCTATGCTGATGGTCTTCCTACCCCAAGATCCGAAGGCGAAATATTATCTTCCCCCAATATGAAAGCCTTTTCATTTAGTGAACTGAAGAATGCAACCAGAAATTTTCGTCCCGACAGTCTTCTTGGAGAAGGAGGATTTGGTTATGTTTTCAAAGGATGGATTGATGAGCATTCACTTACCGCTACGAGGCCTGGATCTGGAATGGTCATTGCCGTCAAGAAGCTTAAACCTGAAGGTTTCCAAGGCCACAAGGAGTGGTTGACAGAAGTAGATTACCTTGGGCAACTACATCATTCAAATCTGGTTAAACTTTTTGGGTACTGTTTGGAAGGTGATAACCGCCTTTTGGTATACGAGTTCATGCCTAAGGGTAGCTTGGAGAATCACCTATTTAGAAGAGGGCCTCAACCACTGTCGTGGGCAACAAGGATCAAAGTGGCCATAGGAGCTGCTAAAGGCCTCTCTTTCCTGCATGACGCTGAATCACAAGTCATATATCGCGATTTCAAGGCTTCTAATATCCTTCTAGACTCGGAATTCAACGCGAAGCTGTCTGATTTTGGTTTGGCCAAGGCAGGTCCAACTGGTGACAAGACTCATGTTACCACTCAAGTAATGGGTACTCATGGATATGCAGCACCAGAGTACGTTGCTACAGGTCGGTTGACAGCAAAAAGTGATGTATACAGCTTTGGGGTTGTGTTGGTTGAACTGTTATCGGGACGCCGTGCTGTTGATAAAACAAAAGTTGGTAGAGAGCAGAATCTCGTGGATTGGGCAAAACCATATTTAGGTGACAAACGAAAACTATTTAGGATTATGGACACTAAGATGGAAGGGCAGTACCCTCAGAAAGCAGCCTATGCTACTGCTACCCTTGCTTTGCAGTGCCTAAGTGCAGACCCTAAAGCCAGACCACGTATGGCGGATGTTTTAACAACACTAGAACAGATCCAAGCCCCAAAAAATGTAGTGAAAATTTTCCAAACAGAACAACATACTGTTGATGAACCTCTTGTGAAGTCAAGATTAAGGCAACGTTGTTCACCTCTAAATTTGACACCTTCTGCATCTCCGTTGCCGGCCCACCGCCAGTCCTTATCAGTACGATGA

Network for GWHGAAZE022822

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	86	361	7.60E-48

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	136.340
	SRR3591706	second leaf	20.784
	SRR3591707	mature leaf	14.896
	SRR3591708	Shoot apex	38.135
	SRR3591709	Stem	88.465
	SRR3591710	White floral bud	77.878
	SRR3591711	White flower	109.078
	SRR3591712	Green floral bud	45.481
	SRR3591713	Yellow flower	107.458
SRP173429	SRR8316895	Juvenile bud stage	29.734
	SRR8316896	Juvenile bud stage	36.296
	SRR8316897	Juvenile bud stage	21.183
	SRR8316894	Third green stage	8.408
	SRR8316900	Third green stage	23.138
	SRR8316901	Third green stage	31.261
	SRR8316898	Complete white stage	20.754
	SRR8316899	Complete white stage	47.526
	SRR8316903	Complete white stage	24.672
	SRR8316902	Silver flowering stage	27.479
	SRR8316904	Silver flowering stage	30.576
	SRR8316905	Silver flowering stage	15.376
	SRR8316906	Gold flowering stage	54.820
	SRR8316907	Gold flowering stage	54.275
	SRR8316908	Gold flowering stage	60.616
SRP132670	SRR6706286	Control	21.276
	SRR6706287	Light intensity 50%	22.924
	SRR6706288	Light intensity 20%	22.641
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.940
	CNS0095593	Slightly white alabastrum(diploid) 2	39.916
	CNS0095594	Slightly white alabastrum(diploid) 3	30.691
	CNS0095595	Whole white alabastrum(diploid) 2	32.946
	CNS0095596	Whole white alabastrum(diploid) 3	6.557
	CNS0095597	Whole white alabastrum(diploid) 4	17.870
	CNS0095598	Silvery flower (diploied) 1	80.466
	CNS0095599	Silvery flower (diploied) 2	82.342
	CNS0095600	Silvery flower (diploied) 3	77.146
	CNS0095601	Golden flower (diploid) 1	66.362
	CNS0095602	Golden flower (diploid) 2	99.952
	CNS0095603	Golden flower (diploid) 3	92.633
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.050
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.243
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.522
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.812
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.662
	CNS0095610	Silvery flower (diploied) 1	57.499
	CNS0095611	Silvery flower (diploied) 2	58.738
	CNS0095612	Silvery flower (diploied) 3	64.988
	CNS0095613	Golden flower (tetraploid) 1	53.328
	CNS0095614	Golden flower (tetraploid) 2	65.278
	CNS0095615	Golden flower (tetraploid) 3	73.653
CRA001975	CRR073297	Stem 1	28.913
	CRR073298	Stem 2	23.352
	CRR073299	Stem 3	28.488
	CRR073300	Leaf 1	33.729
	CRR073301	Leaf 2	41.254
	CRR073302	Leaf 3	26.503
	CRR073303	Juvenile bud 1	31.842
	CRR073304	Juvenile bud 2	50.911
	CRR073305	Juvenile bud 3	53.806
	CRR073306	Third green 1	60.695
	CRR073307	Third green 2	58.965
	CRR073308	Third green 3	53.810
	CRR073309	Second white 1	59.324
	CRR073310	Second white 2	63.714
	CRR073311	Second white 3	58.964
	CRR073312	Silver flowering 1	85.106
	CRR073313	Silver flowering 2	79.908
	CRR073314	Silver flowering 3	87.032
	CRR073315	Gold flowering 1	55.806
	CRR073316	Gold flowering 2	75.905
	CRR073317	Gold flowering 3	67.789
	CRR073318	Tawny withering 1	80.104
	CRR073319	Tawny withering 2	93.307
	CRR073320	Tawny withering 3	95.781