Gene detail

Detail information of GWHGAAZE022950

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006348579.1	8.44077E-96	PREDICTED: peroxidase 56-like [Solanum tuberosum]
Swissprot	tr\|A5H8G4\|PER1_MAIZE	5E-76	Peroxidase 1 (Precursor)
trEMBL	tr\|M1BCN0\|M1BCN0_SOLTU	7E-95	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400042192}
TAIR10	AT4G11290.1	1E-59	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	81103102	81104481	+
GWHAAZE00000006	mRNA	81103102	81104481	+
GWHAAZE00000006	exon	81103102	81103488	+
GWHAAZE00000006	exon	81103735	81104481	+
GWHAAZE00000006	CDS	81103102	81103488	+
GWHAAZE00000006	CDS	81103735	81104481	+

Transcript Sequence
>GWHTAAZE022980 GACACTCCCCTCCTTGAACATCAACGCACTCAATCACACAAGGAAAGTGAAAAACAAAAGATGGGGTCGATTGCAAAAGTAATAGCAACAATCTTCATCGTATACTCCATCCTCTTTCCTCTAGCCTCAGCCGCCGGTTATTCCGACTACAAACCTGGACAATTCATGACCGTCAAAAGCTACGACGCTGAAAAGGTAACTAATCCTATTATGACCCCGTCCGCCGACGAGGCTATTAAGCAAGGCCCCTTAAAGCCTAAATTCTATGATGCTACTTGCCTTAAATCCGAGGAGATGGTTTTCCGTTCTGTCACCAATCACTTCAAAAAATACCCCGATATTGCTGCTAACTTGGTCCGCCTTCATTTGCACGATTGCTTCGTCAGAGGGTGTGATGCATCGAATCTTTTGGACAAAACTCCCGAGGGAGGGAAGACAGAGAAGGAAGCACCTGCAAATGGTATGACTCTGCGTGGTTTCGAGATCATAGACGAGGCAAAGAAGGACATTGAGAACCACTGCCCCGGGGTTGTGTCTTGTGCTGATATATTAGCATTTGCAGCACGTGATGCACTTAATTTAACAGGTCTCTACAGGTACGAGGTTCCAGCTGGTAGGCGTGATGGCAGGATCTCTCGTGAGGCGGAATGCGGTGGTGAAAACATCCCGGGCCCCGCGGATTCTCTTGATCACTTAATAGCAATCTTCAACAAGAGAGGCCTGTCCGTAGAGGACATGGTCGTGATGAATGGTATACACTCAATTGGTGTTGCCCACTGCTTCAACTTTGATTACAGGACTGCAAGCCCTACCGCAAGACCAGTAGATTATAGAGTCAGTCAAGATATCTTTTCCACGTGCAAAGCCCCTACTTATACTATGCCCTTTGACCCCATCACACAGTACCAGTTGGATACTGATTACTTCAAGATTCTTTTGGACAACAAAGGGATCTTGGAATCAGATCAGAAAATGGTTGACGACCCCAGAACTAAGGATATTGTCAAAGCTATGGCTTATGATGAAAAGCTGTGGCATGGGAAGCTTGCTGGAGCCATGATTCGGTTGGGGAATATAGGAGTTCTCACGGGTGCAGAGGGAGAGATTAGGAAAAATTGTCGATTCGTCAACTAA

Network for GWHGAAZE022950

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	103	339	8.20E-65

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.174
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.114
	SRR3591708	Shoot apex	1.252
	SRR3591709	Stem	4.244
	SRR3591710	White floral bud	237.961
	SRR3591711	White flower	4.530
	SRR3591712	Green floral bud	1169.449
	SRR3591713	Yellow flower	0.930
SRP173429	SRR8316895	Juvenile bud stage	315.425
	SRR8316896	Juvenile bud stage	862.641
	SRR8316897	Juvenile bud stage	328.506
	SRR8316894	Third green stage	246.043
	SRR8316900	Third green stage	904.398
	SRR8316901	Third green stage	976.930
	SRR8316898	Complete white stage	0.537
	SRR8316899	Complete white stage	3.847
	SRR8316903	Complete white stage	0.993
	SRR8316902	Silver flowering stage	2.706
	SRR8316904	Silver flowering stage	5.751
	SRR8316905	Silver flowering stage	1.444
	SRR8316906	Gold flowering stage	1.180
	SRR8316907	Gold flowering stage	0.295
	SRR8316908	Gold flowering stage	0.640
SRP132670	SRR6706286	Control	543.298
	SRR6706287	Light intensity 50%	489.205
	SRR6706288	Light intensity 20%	420.923
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	845.794
	CNS0095593	Slightly white alabastrum(diploid) 2	598.499
	CNS0095594	Slightly white alabastrum(diploid) 3	1028.586
	CNS0095595	Whole white alabastrum(diploid) 2	1243.903
	CNS0095596	Whole white alabastrum(diploid) 3	1655.855
	CNS0095597	Whole white alabastrum(diploid) 4	1215.016
	CNS0095598	Silvery flower (diploied) 1	6.520
	CNS0095599	Silvery flower (diploied) 2	25.872
	CNS0095600	Silvery flower (diploied) 3	5.081
	CNS0095601	Golden flower (diploid) 1	7.542
	CNS0095602	Golden flower (diploid) 2	4.885
	CNS0095603	Golden flower (diploid) 3	3.982
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1609.138
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1805.615
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.158
	CNS0095607	Whole white alabastrum(tetraploid) 1	2585.613
	CNS0095608	Whole white alabastrum(tetraploid) 2	2840.863
	CNS0095609	Whole white alabastrum(tetraploid) 3	1361.635
	CNS0095610	Silvery flower (diploied) 1	3.149
	CNS0095611	Silvery flower (diploied) 2	14.553
	CNS0095612	Silvery flower (diploied) 3	57.774
	CNS0095613	Golden flower (tetraploid) 1	3.635
	CNS0095614	Golden flower (tetraploid) 2	2.239
	CNS0095615	Golden flower (tetraploid) 3	33.183
CRA001975	CRR073297	Stem 1	337.724
	CRR073298	Stem 2	334.776
	CRR073299	Stem 3	286.225
	CRR073300	Leaf 1	546.057
	CRR073301	Leaf 2	506.162
	CRR073302	Leaf 3	379.332
	CRR073303	Juvenile bud 1	504.017
	CRR073304	Juvenile bud 2	640.717
	CRR073305	Juvenile bud 3	17.010
	CRR073306	Third green 1	92.939
	CRR073307	Third green 2	162.137
	CRR073308	Third green 3	100.950
	CRR073309	Second white 1	15.837
	CRR073310	Second white 2	11.846
	CRR073311	Second white 3	21.319
	CRR073312	Silver flowering 1	101.452
	CRR073313	Silver flowering 2	138.176
	CRR073314	Silver flowering 3	51.239
	CRR073315	Gold flowering 1	95.848
	CRR073316	Gold flowering 2	11.863
	CRR073317	Gold flowering 3	86.404
	CRR073318	Tawny withering 1	73.210
	CRR073319	Tawny withering 2	71.996
	CRR073320	Tawny withering 3	72.681