Detail information of GWHGAAZE022996


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007223077.12.0211E-172hypothetical protein PRUPE_ppa003754mg [Prunus persica]
COGYP_005440364.16E-37hypothetical protein CLDAP_04270
Swissprottr|Q9FYL3|ALB31_ARATH7E-147ALBINO3-like protein 1, chloroplastic (Precursor)
trEMBLtr|M5XFN4|M5XFN4_PRUPE8E-173Uncharacterized protein {ECO:0000313|EMBL:EMJ24276.1}
TAIR10AT1G24490.12E-111OxaA/YidC-like membrane insertion protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene8178415281788063-
GWHAAZE00000006mRNA8178415281788063-
GWHAAZE00000006exon8178415281784232-
GWHAAZE00000006exon8178450681784857-
GWHAAZE00000006exon8178495281785161-
GWHAAZE00000006exon8178584381785949-
GWHAAZE00000006exon8178648481786591-
GWHAAZE00000006exon8178674681786850-
GWHAAZE00000006exon8178696781787040-
GWHAAZE00000006exon8178758181787641-
GWHAAZE00000006exon8178789081788063-
GWHAAZE00000006CDS8178789081788063-
GWHAAZE00000006CDS8178758181787641-
GWHAAZE00000006CDS8178696781787040-
GWHAAZE00000006CDS8178674681786850-
GWHAAZE00000006CDS8178648481786591-
GWHAAZE00000006CDS8178584381785949-
GWHAAZE00000006CDS8178495281785161-
GWHAAZE00000006CDS8178450681784857-
GWHAAZE00000006CDS8178415281784232-
Transcript Sequence

Network for GWHGAAZE022996

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02096.2160KD_IMP172268.10E-45
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03217yidC, spoIIIJ, OXA1, ccfA Protein export map03060
Bacterial secretion systemmap03070
Quorum sensingmap02024

Gene Ontology

GO term OntologyName
GO:0016021cellular_componentintegral component of membrane
GO:0032977molecular_functionmembrane insertase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf28.275
SRR3591706second leaf45.327
SRR3591707mature leaf57.433
SRR3591708Shoot apex42.991
SRR3591709Stem21.630
SRR3591710White floral bud41.805
SRR3591711White flower55.139
SRR3591712Green floral bud52.629
SRR3591713Yellow flower59.810
SRP173429 SRR8316895Juvenile bud stage 17.187
SRR8316896Juvenile bud stage 22.007
SRR8316897Juvenile bud stage 12.621
SRR8316894Third green stage 12.647
SRR8316900Third green stage 41.216
SRR8316901Third green stage 35.377
SRR8316898Complete white stage 9.971
SRR8316899Complete white stage 39.945
SRR8316903Complete white stage 17.821
SRR8316902Silver flowering stage14.812
SRR8316904Silver flowering stage20.201
SRR8316905Silver flowering stage11.316
SRR8316906Gold flowering stage 51.652
SRR8316907Gold flowering stage 44.286
SRR8316908Gold flowering stage 56.908
SRP132670SRR6706286Control25.157
SRR6706287Light intensity 50%25.352
SRR6706288Light intensity 20%26.011
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.281
CNS0095593Slightly white alabastrum(diploid) 214.527
CNS0095594Slightly white alabastrum(diploid) 311.543
CNS0095595Whole white alabastrum(diploid) 214.287
CNS0095596Whole white alabastrum(diploid) 313.258
CNS0095597Whole white alabastrum(diploid) 411.409
CNS0095598Silvery flower (diploied) 118.712
CNS0095599Silvery flower (diploied) 213.969
CNS0095600Silvery flower (diploied) 328.824
CNS0095601Golden flower (diploid) 115.983
CNS0095602Golden flower (diploid) 227.136
CNS0095603Golden flower (diploid) 326.988
CNS0095604Slightly white alabastrum(tetraploid) 118.634
CNS0095605Slightly white alabastrum(tetraploid) 217.378
CNS0095606Slightly white alabastrum(tetraploid) 336.126
CNS0095607Whole white alabastrum(tetraploid) 19.578
CNS0095608Whole white alabastrum(tetraploid) 211.681
CNS0095609Whole white alabastrum(tetraploid) 332.593
CNS0095610Silvery flower (diploied) 133.985
CNS0095611Silvery flower (diploied) 241.087
CNS0095612Silvery flower (diploied) 342.325
CNS0095613Golden flower (tetraploid) 122.523
CNS0095614Golden flower (tetraploid) 231.146
CNS0095615Golden flower (tetraploid) 334.923
CRA001975CRR073297Stem 122.921
CRR073298Stem 222.708
CRR073299Stem 316.931
CRR073300Leaf 124.450
CRR073301Leaf 222.205
CRR073302Leaf 321.281
CRR073303Juvenile bud 120.906
CRR073304Juvenile bud 215.177
CRR073305Juvenile bud 326.387
CRR073306Third green 112.245
CRR073307Third green 27.366
CRR073308Third green 310.077
CRR073309Second white 128.065
CRR073310Second white 230.516
CRR073311Second white 330.954
CRR073312Silver flowering 131.047
CRR073313Silver flowering 235.787
CRR073314Silver flowering 329.926
CRR073315Gold flowering 125.983
CRR073316Gold flowering 243.585
CRR073317Gold flowering 326.861
CRR073318Tawny withering 19.523
CRR073319Tawny withering 210.907
CRR073320Tawny withering 310.210